Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 AC098818.2-201ENST00000564925 2320 ntBASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 AC116562.4-201ENST00000641316 2276 ntBASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.43■□□□□ 0.86
USH1CQ9Y6N9 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
USH1CQ9Y6N9 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
USH1CQ9Y6N9 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.42■□□□□ 0.86
USH1CQ9Y6N9 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USH1CQ9Y6N9 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USH1CQ9Y6N9 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
USH1CQ9Y6N9 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.42■□□□□ 0.86
USH1CQ9Y6N9 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USH1CQ9Y6N9 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USH1CQ9Y6N9 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
USH1CQ9Y6N9 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
USH1CQ9Y6N9 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 KRT16P3-201ENST00000439127 1283 ntBASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 AC092171.4-201ENST00000609130 632 ntBASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
USH1CQ9Y6N9 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
USH1CQ9Y6N9 FP700111.2-201ENST00000619190 1892 ntBASIC20.39■□□□□ 0.86
USH1CQ9Y6N9 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
USH1CQ9Y6N9 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 RARRES2P1-201ENST00000474487 481 ntBASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 AP005435.1-201ENST00000529293 1178 ntBASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 AL356740.2-201ENST00000601559 647 ntBASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
USH1CQ9Y6N9 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
USH1CQ9Y6N9 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USH1CQ9Y6N9 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USH1CQ9Y6N9 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USH1CQ9Y6N9 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USH1CQ9Y6N9 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms