Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.47■□□□□ 0.71
ATG4BQ9Y4P1 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.47■□□□□ 0.71
ATG4BQ9Y4P1 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.47■□□□□ 0.71
ATG4BQ9Y4P1 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.47■□□□□ 0.71
ATG4BQ9Y4P1 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 AC007322.4-201ENST00000509611 723 ntBASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 AC090192.1-201ENST00000517740 490 ntBASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 AL591742.1-201ENST00000604433 565 ntBASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ATG4BQ9Y4P1 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 CDV3P1-201ENST00000471403 739 ntBASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ATG4BQ9Y4P1 AC027702.1-201ENST00000563810 1770 ntBASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 AC007225.1-201ENST00000566331 1836 ntBASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 FP700111.2-201ENST00000619190 1892 ntBASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ATG4BQ9Y4P1 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 AC016405.3-201ENST00000607710 860 ntBASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 AC080038.1-201ENST00000611274 1154 ntBASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 AL157384.1-201ENST00000445995 2473 ntBASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.43■□□□□ 0.7
ATG4BQ9Y4P1 AC068338.2-201ENST00000563278 1430 ntBASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG4BQ9Y4P1 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms