Protein–RNA interactions for Protein: Q9Y3B2

EXOSC1, Exosome complex component CSL4, humanhuman

Known RBP Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC1Q9Y3B2 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
EXOSC1Q9Y3B2 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
EXOSC1Q9Y3B2 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.38■□□□□ 0.53
EXOSC1Q9Y3B2 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
EXOSC1Q9Y3B2 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.38■□□□□ 0.53
EXOSC1Q9Y3B2 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
EXOSC1Q9Y3B2 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
EXOSC1Q9Y3B2 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
EXOSC1Q9Y3B2 AC055733.4-201ENST00000638462 1354 ntBASIC18.38■□□□□ 0.53
EXOSC1Q9Y3B2 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
EXOSC1Q9Y3B2 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
EXOSC1Q9Y3B2 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
EXOSC1Q9Y3B2 BX323043.1-201ENST00000641006 1765 ntBASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 AL512631.2-201ENST00000604634 923 ntBASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
EXOSC1Q9Y3B2 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 QDPR-206ENST00000508623 601 ntTSL 3 BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
EXOSC1Q9Y3B2 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 AC087289.5-201ENST00000586076 3175 ntBASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.35■□□□□ 0.53
EXOSC1Q9Y3B2 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 AC018445.3-201ENST00000624177 1945 ntBASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
EXOSC1Q9Y3B2 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
EXOSC1Q9Y3B2 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
EXOSC1Q9Y3B2 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC18.33■□□□□ 0.53
EXOSC1Q9Y3B2 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms