Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS9D1Q9Y2B5 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
VPS9D1Q9Y2B5 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS9D1Q9Y2B5 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 FP700111.2-201ENST00000619190 1892 ntBASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 GABARAPL3-202ENST00000624044 1851 ntBASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS9D1Q9Y2B5 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 RARRES2P6-201ENST00000567333 442 ntBASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
VPS9D1Q9Y2B5 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS9D1Q9Y2B5 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS9D1Q9Y2B5 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.39■□□□□ 0.86
VPS9D1Q9Y2B5 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.39■□□□□ 0.86
VPS9D1Q9Y2B5 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS9D1Q9Y2B5 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.86
VPS9D1Q9Y2B5 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS9D1Q9Y2B5 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
VPS9D1Q9Y2B5 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS9D1Q9Y2B5 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.39■□□□□ 0.85
VPS9D1Q9Y2B5 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS9D1Q9Y2B5 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.39■□□□□ 0.85
VPS9D1Q9Y2B5 AC137761.2-201ENST00000561729 223 ntBASIC20.39■□□□□ 0.85
VPS9D1Q9Y2B5 AC145350.3-201ENST00000569033 163 ntBASIC20.39■□□□□ 0.85
VPS9D1Q9Y2B5 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.39■□□□□ 0.85
VPS9D1Q9Y2B5 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS9D1Q9Y2B5 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS9D1Q9Y2B5 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS9D1Q9Y2B5 AP005212.1-201ENST00000581547 1997 ntBASIC20.39■□□□□ 0.85
VPS9D1Q9Y2B5 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.39■□□□□ 0.85
VPS9D1Q9Y2B5 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.39■□□□□ 0.85
VPS9D1Q9Y2B5 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 AC026271.2-201ENST00000428091 497 ntBASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
VPS9D1Q9Y2B5 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms