Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDH9Q9HC56 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.24■□□□□ 0.99
PCDH9Q9HC56 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
PCDH9Q9HC56 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.24■□□□□ 0.99
PCDH9Q9HC56 AC010141.2-201ENST00000452426 721 ntBASIC21.24■□□□□ 0.99
PCDH9Q9HC56 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.24■□□□□ 0.99
PCDH9Q9HC56 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.24■□□□□ 0.99
PCDH9Q9HC56 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PCDH9Q9HC56 AP001160.3-201ENST00000601484 763 ntBASIC21.24■□□□□ 0.99
PCDH9Q9HC56 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDH9Q9HC56 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PCDH9Q9HC56 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDH9Q9HC56 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
PCDH9Q9HC56 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDH9Q9HC56 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PCDH9Q9HC56 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 AC008175.2-201ENST00000612840 297 ntBASIC21.23■□□□□ 0.99
PCDH9Q9HC56 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
PCDH9Q9HC56 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDH9Q9HC56 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 POU5F1P4-201ENST00000413175 1085 ntBASIC21.21■□□□□ 0.99
PCDH9Q9HC56 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.21■□□□□ 0.99
PCDH9Q9HC56 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.21■□□□□ 0.99
PCDH9Q9HC56 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
PCDH9Q9HC56 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDH9Q9HC56 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PCDH9Q9HC56 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.19■□□□□ 0.98
PCDH9Q9HC56 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PCDH9Q9HC56 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PCDH9Q9HC56 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDH9Q9HC56 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms