Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM56Q9BRZ2 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 FP700111.2-201ENST00000619190 1892 ntBASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
TRIM56Q9BRZ2 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 GABARAPL3-202ENST00000624044 1851 ntBASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 AP004607.4-201ENST00000530158 1459 ntBASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 AC027612.3-201ENST00000413684 1047 ntBASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM56Q9BRZ2 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM56Q9BRZ2 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM56Q9BRZ2 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM56Q9BRZ2 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
TRIM56Q9BRZ2 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM56Q9BRZ2 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.89■□□□□ 0.94
TRIM56Q9BRZ2 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
TRIM56Q9BRZ2 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
TRIM56Q9BRZ2 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.89■□□□□ 0.93
TRIM56Q9BRZ2 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM56Q9BRZ2 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.89■□□□□ 0.93
TRIM56Q9BRZ2 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM56Q9BRZ2 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM56Q9BRZ2 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
TRIM56Q9BRZ2 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
TRIM56Q9BRZ2 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.89■□□□□ 0.93
TRIM56Q9BRZ2 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 AC112907.3-201ENST00000577781 2400 ntBASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM56Q9BRZ2 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
TRIM56Q9BRZ2 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM56Q9BRZ2 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM56Q9BRZ2 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM56Q9BRZ2 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
TRIM56Q9BRZ2 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
TRIM56Q9BRZ2 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM56Q9BRZ2 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM56Q9BRZ2 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM56Q9BRZ2 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM56Q9BRZ2 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM56Q9BRZ2 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM56Q9BRZ2 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM56Q9BRZ2 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
TRIM56Q9BRZ2 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM56Q9BRZ2 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms