Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
TTC28Q96AY4 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.22■□□□□ 0.99
TTC28Q96AY4 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TTC28Q96AY4 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TTC28Q96AY4 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC21.22■□□□□ 0.99
TTC28Q96AY4 AC116407.4-201ENST00000623319 1061 ntBASIC21.22■□□□□ 0.99
TTC28Q96AY4 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.22■□□□□ 0.99
TTC28Q96AY4 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TTC28Q96AY4 LINC00526-201ENST00000581067 1875 ntBASIC21.21■□□□□ 0.99
TTC28Q96AY4 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
TTC28Q96AY4 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TTC28Q96AY4 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.21■□□□□ 0.99
TTC28Q96AY4 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.21■□□□□ 0.99
TTC28Q96AY4 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TTC28Q96AY4 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TTC28Q96AY4 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TTC28Q96AY4 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TTC28Q96AY4 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.21■□□□□ 0.99
TTC28Q96AY4 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.21■□□□□ 0.99
TTC28Q96AY4 SLC25A1P4-201ENST00000567977 778 ntBASIC21.21■□□□□ 0.99
TTC28Q96AY4 IRF5-214ENST00000613821 595 ntTSL 5 BASIC21.21■□□□□ 0.99
TTC28Q96AY4 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TTC28Q96AY4 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
TTC28Q96AY4 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
TTC28Q96AY4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TTC28Q96AY4 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.2■□□□□ 0.98
TTC28Q96AY4 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TTC28Q96AY4 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TTC28Q96AY4 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TTC28Q96AY4 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
TTC28Q96AY4 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC21.2■□□□□ 0.98
TTC28Q96AY4 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TTC28Q96AY4 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
TTC28Q96AY4 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
TTC28Q96AY4 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TTC28Q96AY4 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.2■□□□□ 0.98
TTC28Q96AY4 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
TTC28Q96AY4 KRT8P45-201ENST00000414328 1447 ntBASIC21.2■□□□□ 0.98
TTC28Q96AY4 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.2■□□□□ 0.98
TTC28Q96AY4 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TTC28Q96AY4 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TTC28Q96AY4 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
TTC28Q96AY4 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TTC28Q96AY4 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
TTC28Q96AY4 AC091799.1-201ENST00000422823 811 ntBASIC21.19■□□□□ 0.98
TTC28Q96AY4 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TTC28Q96AY4 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
TTC28Q96AY4 CD320-202ENST00000537716 1119 ntTSL 2 BASIC21.19■□□□□ 0.98
TTC28Q96AY4 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TTC28Q96AY4 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21.19■□□□□ 0.98
TTC28Q96AY4 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TTC28Q96AY4 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TTC28Q96AY4 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TTC28Q96AY4 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TTC28Q96AY4 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TTC28Q96AY4 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC21.19■□□□□ 0.98
TTC28Q96AY4 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.19■□□□□ 0.98
TTC28Q96AY4 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.19■□□□□ 0.98
TTC28Q96AY4 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
TTC28Q96AY4 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TTC28Q96AY4 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TTC28Q96AY4 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TTC28Q96AY4 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TTC28Q96AY4 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TTC28Q96AY4 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TTC28Q96AY4 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TTC28Q96AY4 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TTC28Q96AY4 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TTC28Q96AY4 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
TTC28Q96AY4 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TTC28Q96AY4 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TTC28Q96AY4 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
TTC28Q96AY4 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC21.18■□□□□ 0.98
TTC28Q96AY4 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TTC28Q96AY4 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TTC28Q96AY4 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
TTC28Q96AY4 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TTC28Q96AY4 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TTC28Q96AY4 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TTC28Q96AY4 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
TTC28Q96AY4 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TTC28Q96AY4 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.17■□□□□ 0.98
TTC28Q96AY4 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TTC28Q96AY4 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TTC28Q96AY4 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.17■□□□□ 0.98
TTC28Q96AY4 LIN28AP1-201ENST00000429574 405 ntBASIC21.17■□□□□ 0.98
TTC28Q96AY4 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.17■□□□□ 0.98
TTC28Q96AY4 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.17■□□□□ 0.98
TTC28Q96AY4 CR769767.2-201ENST00000622735 460 ntBASIC21.17■□□□□ 0.98
TTC28Q96AY4 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TTC28Q96AY4 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TTC28Q96AY4 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TTC28Q96AY4 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TTC28Q96AY4 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.17■□□□□ 0.98
TTC28Q96AY4 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.17■□□□□ 0.98
TTC28Q96AY4 AC010203.1-204ENST00000548782 407 ntBASIC21.17■□□□□ 0.98
TTC28Q96AY4 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.17■□□□□ 0.98
TTC28Q96AY4 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TTC28Q96AY4 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.16■□□□□ 0.98
TTC28Q96AY4 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms