Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.221e-6■■■■□ 26.1
UPF1Q92900 FBXL18-202ENST00000415009 2526 ntTSL 216.21■□□□□ 0.191e-6■■■■□ 26.1
UPF1Q92900 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.363e-9■■■■□ 26.1
UPF1Q92900 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.233e-9■■■■□ 26.1
UPF1Q92900 APH1A-205ENST00000461320 1038 ntTSL 317.6■□□□□ 0.411e-13■■■■□ 26.1
UPF1Q92900 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC22.53■■□□□ 1.26e-12■■■■□ 26.1
UPF1Q92900 SOD2-202ENST00000367054 815 ntTSL 2 BASIC20.19■□□□□ 0.826e-12■■■■□ 26.1
UPF1Q92900 SOD2-203ENST00000367055 990 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.046e-12■■■■□ 26.1
UPF1Q92900 SOD2-216ENST00000546260 4302 ntTSL 59.93□□□□□ -0.826e-12■■■■□ 26.1
UPF1Q92900 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.256e-12■■■■□ 26.1
UPF1Q92900 PDPR-206ENST00000564563 2381 ntTSL 213.01□□□□□ -0.331e-8■■■■□ 26.1
UPF1Q92900 PDPR-207ENST00000565186 4353 ntTSL 28.55□□□□□ -1.041e-8■■■■□ 26.1
UPF1Q92900 FGF11-203ENST00000575082 2315 ntTSL 2 BASIC11.83□□□□□ -0.518e-7■■■■□ 26.1
UPF1Q92900 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.166e-7■■■■□ 26.1
UPF1Q92900 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC14.26□□□□□ -0.131e-14■■■■□ 26
UPF1Q92900 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.181e-14■■■■□ 26
UPF1Q92900 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.381e-14■■■■□ 26
UPF1Q92900 PRR11-203ENST00000578542 2334 ntTSL 512.7□□□□□ -0.385e-8■■■■□ 26
UPF1Q92900 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC11.2□□□□□ -0.625e-8■■■■□ 26
UPF1Q92900 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC25.29■■□□□ 1.645e-8■■■■□ 26
UPF1Q92900 C20orf27-204ENST00000399683 933 ntTSL 221.55■■□□□ 1.042e-7■■■■□ 26
UPF1Q92900 HDGF-209ENST00000495212 744 ntTSL 329.07■■■□□ 2.241e-34■■■■□ 26
UPF1Q92900 HDGF-206ENST00000471377 592 ntTSL 312.46□□□□□ -0.411e-34■■■■□ 26
UPF1Q92900 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.093e-8■■■■□ 26
UPF1Q92900 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.013e-8■■■■□ 26
UPF1Q92900 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.023e-8■■■■□ 26
UPF1Q92900 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.033e-8■■■■□ 26
UPF1Q92900 CAMKK2-205ENST00000392474 4453 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.143e-8■■■■□ 26
UPF1Q92900 CAMKK2-216ENST00000545538 3797 ntTSL 1 (best) BASIC10.94□□□□□ -0.663e-8■■■■□ 26
UPF1Q92900 BAP1-204ENST00000469613 1654 ntTSL 1 (best)22.72■■□□□ 1.232e-6■■■■□ 26
UPF1Q92900 BAP1-207ENST00000478368 1234 ntTSL 1 (best)19.95■□□□□ 0.782e-6■■■■□ 26
UPF1Q92900 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.373e-6■■■■□ 26
UPF1Q92900 BAP1-211ENST00000615113 489 ntBASIC16.42■□□□□ 0.222e-6■■■■□ 26
UPF1Q92900 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.133e-6■■■■□ 26
UPF1Q92900 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.12e-6■■■■□ 26
UPF1Q92900 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC12.94□□□□□ -0.343e-6■■■■□ 26
UPF1Q92900 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.353e-6■■■■□ 26
UPF1Q92900 HECTD1-214ENST00000556281 684 ntTSL 1 (best)11.39□□□□□ -0.593e-6■■■■□ 26
UPF1Q92900 BAP1-201ENST00000296288 3434 ntTSL 5 BASIC10.48□□□□□ -0.732e-6■■■■□ 26
UPF1Q92900 HECTD1-208ENST00000554882 3748 ntTSL 56.93□□□□□ -1.33e-6■■■■□ 26
UPF1Q92900 HECTD1-210ENST00000555843 4281 ntTSL 25.11□□□□□ -1.593e-6■■■■□ 26
UPF1Q92900 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.132e-8■■■■□ 26
UPF1Q92900 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.582e-8■■■■□ 26
UPF1Q92900 RSL1D1-204ENST00000571133 5483 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.778e-7■■■■□ 26
UPF1Q92900 OTUD7B-202ENST00000581312 8872 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.816e-7■■■■□ 26
UPF1Q92900 ANGEL1-201ENST00000251089 5176 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.555e-7■■■■□ 26
UPF1Q92900 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.152e-6■■■■□ 26
UPF1Q92900 PTPRS-201ENST00000262963 4766 ntTSL 5 BASIC12.1□□□□□ -0.472e-6■■■■□ 26
UPF1Q92900 PTPRS-210ENST00000592099 4766 ntTSL 1 (best) BASIC12.1□□□□□ -0.472e-6■■■■□ 26
UPF1Q92900 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.98□□□□□ -0.011e-25■■■■□ 26
UPF1Q92900 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC6.47□□□□□ -1.371e-6■■■■□ 26
UPF1Q92900 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.641e-6■■■■□ 26
UPF1Q92900 CARD10-206ENST00000467812 1910 ntTSL 225.53■■□□□ 1.681e-6■■■■□ 26
UPF1Q92900 CARD10-209ENST00000488141 2169 ntTSL 223.52■■□□□ 1.361e-6■■■■□ 26
UPF1Q92900 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.671e-6■■■■□ 26
UPF1Q92900 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.081e-6■■■■□ 26
UPF1Q92900 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC13.82□□□□□ -0.21e-6■■■■□ 26
UPF1Q92900 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.533e-7■■■■□ 26
UPF1Q92900 ARSA-207ENST00000608497 576 ntTSL 319.82■□□□□ 0.761e-6■■■■□ 26
UPF1Q92900 C19orf54-202ENST00000469741 1792 ntTSL 220.7■□□□□ 0.91e-7■■■■□ 26
UPF1Q92900 C19orf54-206ENST00000596940 492 ntTSL 320.49■□□□□ 0.871e-7■■■■□ 26
UPF1Q92900 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.39■□□□□ 0.371e-7■■■■□ 26
UPF1Q92900 C19orf54-209ENST00000598485 553 ntTSL 5 BASIC16.16■□□□□ 0.181e-7■■■■□ 26
UPF1Q92900 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.011e-7■■■■□ 26
UPF1Q92900 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.76□□□□□ -0.211e-21■■■■□ 25.9
UPF1Q92900 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.06■□□□□ 0.163e-10■■■■□ 25.9
UPF1Q92900 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.13e-10■■■■□ 25.9
UPF1Q92900 BIRC5-201ENST00000301633 2711 ntTSL 1 (best) BASIC13.88□□□□□ -0.193e-10■■■■□ 25.9
UPF1Q92900 SMG6-215ENST00000574501 2419 nt14.37□□□□□ -0.112e-7■■■■□ 25.9
UPF1Q92900 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.122e-7■■■■□ 25.9
UPF1Q92900 AC079466.1-201ENST00000587961 4453 ntTSL 2 BASIC9.14□□□□□ -0.953e-28■■■■□ 25.9
UPF1Q92900 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC27.91■■■□□ 2.068e-14■■■■□ 25.9
UPF1Q92900 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC27.84■■■□□ 2.058e-14■■■■□ 25.9
UPF1Q92900 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC27.49■■□□□ 1.998e-14■■■■□ 25.9
UPF1Q92900 CRKL-202ENST00000411769 2037 ntTSL 1 (best)23.61■■□□□ 1.374e-23■■■■□ 25.9
UPF1Q92900 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.424e-23■■■■□ 25.9
UPF1Q92900 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC29.55■■■□□ 2.321e-6■■■■□ 25.9
UPF1Q92900 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC21.01■□□□□ 0.951e-6■■■■□ 25.9
UPF1Q92900 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.844e-7■■■■□ 25.9
UPF1Q92900 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.454e-7■■■■□ 25.9
UPF1Q92900 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.438e-7■■■■□ 25.9
UPF1Q92900 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.165e-7■■■■□ 25.9
UPF1Q92900 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.17■□□□□ 0.025e-7■■■■□ 25.9
UPF1Q92900 CASP2-206ENST00000493642 2166 ntTSL 1 (best)11.16□□□□□ -0.628e-7■■■■□ 25.9
UPF1Q92900 CASP2-204ENST00000472067 5769 ntTSL 210.93□□□□□ -0.668e-7■■■■□ 25.9
UPF1Q92900 LSS-211ENST00000522411 2523 ntTSL 2 BASIC15.56■□□□□ 0.083e-54■■■■□ 25.9
UPF1Q92900 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.594e-7■■■■□ 25.9
UPF1Q92900 ICAM5-203ENST00000586480 2599 ntTSL 1 (best)23.95■■□□□ 1.427e-11■■■■□ 25.9
UPF1Q92900 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.797e-11■■■■□ 25.9
UPF1Q92900 JUP-201ENST00000310706 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.482e-8■■■■□ 25.9
UPF1Q92900 JUP-202ENST00000393930 3298 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.532e-8■■■■□ 25.9
UPF1Q92900 JUP-203ENST00000393931 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.542e-8■■■■□ 25.9
UPF1Q92900 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.562e-6■■■■□ 25.9
UPF1Q92900 AC090004.1-202ENST00000601399 787 ntTSL 515.09■□□□□ 0.012e-6■■■■□ 25.9
UPF1Q92900 AC090004.1-203ENST00000626721 886 ntTSL 512.37□□□□□ -0.432e-6■■■■□ 25.9
UPF1Q92900 TMEM43-201ENST00000306077 3341 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.942e-6■■■■□ 25.9
UPF1Q92900 P2RX1-202ENST00000571637 1126 ntTSL 1 (best)31.15■■■□□ 2.582e-6■■■■□ 25.9
UPF1Q92900 RNF24-202ENST00000358395 3242 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.31e-7■■■■□ 25.9
UPF1Q92900 RNF24-201ENST00000336095 7453 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.385e-7■■■■□ 25.9
UPF1Q92900 RNF24-203ENST00000432261 3149 ntTSL 5 BASIC8□□□□□ -1.131e-7■■■■□ 25.9
Retrieved 100 of 15,879 protein–RNA pairs in 166.4 ms