RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 NISCHQ9Y2I1 1504 aa27.28■■□□□ 1.96
SMG6-215ENST00000574501 HRCP23327 699 aa24.41■■□□□ 1.5
SMG6-215ENST00000574501 SHROOM4Q9ULL8 1493 aa24.31■■□□□ 1.48
SMG6-215ENST00000574501 SUPT5HO00267 1087 aaKnown RBP24.21■■□□□ 1.47
SMG6-215ENST00000574501 PPARGC1BQ86YN6 1023 aaKnown RBP24.01■■□□□ 1.43
SMG6-215ENST00000574501 PCGF6Q9BYE7 350 aa24.01■■□□□ 1.43
SMG6-215ENST00000574501 MYO15BQ96JP2 1530 aa23.91■■□□□ 1.42
SMG6-215ENST00000574501 CHIC1Q5VXU3 224 aa23.75■■□□□ 1.39
SMG6-215ENST00000574501 PELP1Q8IZL8 1130 aaKnown RBP23.39■■□□□ 1.33
SMG6-215ENST00000574501 DCAF1Q9Y4B6 1507 aa23.29■■□□□ 1.32
SMG6-215ENST00000574501 LOC105371045A0A1W2PR82 267 aa23.28■■□□□ 1.32
SMG6-215ENST00000574501 CCDC180Q9P1Z9 1646 aa23.25■■□□□ 1.31
SMG6-215ENST00000574501 ZCCHC6Q5VYS8 1495 aaKnown RBP23.2■■□□□ 1.3
SMG6-215ENST00000574501 TRIM26Q12899 539 aaPredicted RBP23.17■■□□□ 1.3
SMG6-215ENST00000574501 SCAF1Q9H7N4 1312 aaKnown RBP23.12■■□□□ 1.29
SMG6-215ENST00000574501 DCAF8L2P0C7V8 631 aa22.91■■□□□ 1.26
SMG6-215ENST00000574501 ZEB1P37275 1124 aaPredicted RBP22.91■■□□□ 1.26
SMG6-215ENST00000574501 ACIN1Q9UKV3 1341 aaKnown RBP22.53■■□□□ 1.2
SMG6-215ENST00000574501 NEUROD1Q13562 356 aa22.5■■□□□ 1.19
SMG6-215ENST00000574501 ABCC9O60706 1549 aa22.45■■□□□ 1.19
SMG6-215ENST00000574501 MYT1Q01538 1121 aa22.42■■□□□ 1.18
SMG6-215ENST00000574501 FAM9AQ8IZU1 332 aaPredicted RBP22.41■■□□□ 1.18
SMG6-215ENST00000574501 EHMT2Q96KQ7 1210 aa22.39■■□□□ 1.17
SMG6-215ENST00000574501 GTF3C3Q9Y5Q9 886 aa22.38■■□□□ 1.17
SMG6-215ENST00000574501 TRIM41Q8WV44 630 aa22.34■■□□□ 1.17
SMG6-215ENST00000574501 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.27■■□□□ 1.16
SMG6-215ENST00000574501 CENPBP07199 599 aaPredicted RBP22.21■■□□□ 1.15
SMG6-215ENST00000574501 DIEXFQ68CQ4 756 aaKnown RBP22.19■■□□□ 1.14
SMG6-215ENST00000574501 CCER1Q8TC90 406 aaPredicted RBP22.19■■□□□ 1.14
SMG6-215ENST00000574501 RSF1Q96T23 1441 aaPredicted RBP22■■□□□ 1.11
SMG6-215ENST00000574501 RB1CC1Q8TDY2 1594 aa21.92■■□□□ 1.1
SMG6-215ENST00000574501 YTHDC1Q96MU7 727 aaKnown RBP21.9■■□□□ 1.1
SMG6-215ENST00000574501 TTBK1Q5TCY1 1321 aaPredicted RBP21.84■■□□□ 1.09
SMG6-215ENST00000574501 NACADO15069 1562 aa21.79■■□□□ 1.08
SMG6-215ENST00000574501 ZNF316A6NFI3 1004 aaPredicted RBP21.74■■□□□ 1.07
SMG6-215ENST00000574501 SCRIBQ14160 1630 aa21.68■■□□□ 1.06
SMG6-215ENST00000574501 MIER1Q8N108 512 aa21.64■■□□□ 1.05
SMG6-215ENST00000574501 WRNQ14191 1432 aaPredicted RBP eCLIP21.45■■□□□ 1.021e-6■■■■■ 58.5
SMG6-215ENST00000574501 CECR2Q9BXF3 1484 aa21.42■■□□□ 1.02
SMG6-215ENST00000574501 CEP162Q5TB80 1403 aa21.4■■□□□ 1.02
SMG6-215ENST00000574501 MROH2BQ7Z745 1585 aa21.36■■□□□ 1.01
SMG6-215ENST00000574501 WIZO95785 1651 aa21.31■■□□□ 1
SMG6-215ENST00000574501 HNRNPUL2Q1KMD3 747 aaKnown RBP21.3■■□□□ 1
SMG6-215ENST00000574501 SUPT16HQ9Y5B9 1047 aaKnown RBP21.29■■□□□ 1
SMG6-215ENST00000574501 CCDC88BA6NC98 1476 aa21.24■□□□□ 0.99
SMG6-215ENST00000574501 UBTFP17480 764 aaKnown RBP21.22■□□□□ 0.99
SMG6-215ENST00000574501 TNIKQ9UKE5 1360 aa21.22■□□□□ 0.99
SMG6-215ENST00000574501 UNC13AQ9UPW8 1703 aa21.21■□□□□ 0.99
SMG6-215ENST00000574501 ABCC8Q09428 1581 aa21.2■□□□□ 0.99
SMG6-215ENST00000574501 EIF4G1Q04637 1599 aaKnown RBP21.2■□□□□ 0.98
SMG6-215ENST00000574501 ANP32EQ9BTT0 268 aa21.19■□□□□ 0.98
SMG6-215ENST00000574501 TSHZ2Q9NRE2 1034 aa21.19■□□□□ 0.98
SMG6-215ENST00000574501 SOGA1O94964 1423 aa21.18■□□□□ 0.98
SMG6-215ENST00000574501 PABPN1Q86U42 306 aaKnown RBP eCLIP21.17■□□□□ 0.98
SMG6-215ENST00000574501 BCL11AQ9H165 835 aa21.14■□□□□ 0.97
SMG6-215ENST00000574501 CLSPNQ9HAW4 1339 aa21.11■□□□□ 0.97
SMG6-215ENST00000574501 CSRNP3Q8WYN3 585 aa21.09■□□□□ 0.97
SMG6-215ENST00000574501 BAZ1AQ9NRL2 1556 aaPredicted RBP21.08■□□□□ 0.96
SMG6-215ENST00000574501 RUSC2Q8N2Y8 1516 aa21.06■□□□□ 0.96
SMG6-215ENST00000574501 BICRAQ9NZM4 1560 aa21.05■□□□□ 0.96
SMG6-215ENST00000574501 GOLGA3Q08378 1498 aa20.94■□□□□ 0.94
SMG6-215ENST00000574501 EEA1Q15075 1411 aa20.92■□□□□ 0.94
SMG6-215ENST00000574501 BCANQ96GW7 911 aa20.92■□□□□ 0.94
SMG6-215ENST00000574501 APLP2Q06481 763 aa20.86■□□□□ 0.93
SMG6-215ENST00000574501 KCNH8Q96L42 1107 aa20.85■□□□□ 0.93
SMG6-215ENST00000574501 RANGAP1P46060 587 aaPredicted RBP20.82■□□□□ 0.92
SMG6-215ENST00000574501 TOP2AP11388 1531 aaKnown RBP20.82■□□□□ 0.92
SMG6-215ENST00000574501 CLIP1P30622 1438 aa20.82■□□□□ 0.92
SMG6-215ENST00000574501 DHX57Q6P158 1386 aaKnown RBP20.8■□□□□ 0.92
SMG6-215ENST00000574501 SMARCA2P51531 1590 aa20.8■□□□□ 0.92
SMG6-215ENST00000574501 VPS8Q8N3P4 1428 aa20.77■□□□□ 0.92
SMG6-215ENST00000574501 FKBP8Q14318 412 aa20.76■□□□□ 0.91
SMG6-215ENST00000574501 CEP164Q9UPV0 1460 aa20.72■□□□□ 0.91
SMG6-215ENST00000574501 RBM19Q9Y4C8 960 aaKnown RBP20.7■□□□□ 0.9
SMG6-215ENST00000574501 KIF21BO75037 1637 aa20.62■□□□□ 0.89
SMG6-215ENST00000574501 ITGAEP38570 1179 aa20.61■□□□□ 0.89
SMG6-215ENST00000574501 SMARCA4P51532 1647 aa20.6■□□□□ 0.89
SMG6-215ENST00000574501 RAPGEF2Q9Y4G8 1499 aa20.58■□□□□ 0.88
SMG6-215ENST00000574501 NEFLP07196 543 aa20.54■□□□□ 0.88
SMG6-215ENST00000574501 KANK4Q5T7N3 995 aaPredicted RBP20.54■□□□□ 0.88
SMG6-215ENST00000574501 MSH5O43196 834 aa20.53■□□□□ 0.88
SMG6-215ENST00000574501 DDX10Q13206 875 aaKnown RBP20.52■□□□□ 0.88
SMG6-215ENST00000574501 SYNJ1O43426 1573 aa20.51■□□□□ 0.87
SMG6-215ENST00000574501 BAZ1BQ9UIG0 1483 aaKnown RBP20.5■□□□□ 0.87
SMG6-215ENST00000574501 TRIM52Q96A61 297 aa20.48■□□□□ 0.87
SMG6-215ENST00000574501 RRBP1Q9P2E9 1410 aaKnown RBP20.38■□□□□ 0.85
SMG6-215ENST00000574501 HIRIP3Q9BW71 556 aaPredicted RBP20.36■□□□□ 0.85
SMG6-215ENST00000574501 ARAP1Q96P48 1450 aa20.35■□□□□ 0.85
SMG6-215ENST00000574501 CUX2O14529 1486 aa20.34■□□□□ 0.85
SMG6-215ENST00000574501 CCNB3Q8WWL7 1395 aa20.34■□□□□ 0.85
SMG6-215ENST00000574501 PPP1R15AO75807 674 aaPredicted RBP20.33■□□□□ 0.84
SMG6-215ENST00000574501 ERICH6Q7L0X2 663 aa20.32■□□□□ 0.84
SMG6-215ENST00000574501 RAB3GAP2Q9H2M9 1393 aa20.32■□□□□ 0.84
SMG6-215ENST00000574501 MAPKBP1O60336 1514 aa20.31■□□□□ 0.84
SMG6-215ENST00000574501 SIN3AQ96ST3 1273 aa20.31■□□□□ 0.84
SMG6-215ENST00000574501 WDR97A6NE52 1622 aa20.3■□□□□ 0.84
SMG6-215ENST00000574501 FANCIQ9NVI1 1328 aa20.27■□□□□ 0.84
SMG6-215ENST00000574501 ANP32CO43423 234 aa20.27■□□□□ 0.84
SMG6-215ENST00000574501 IRX6P78412 446 aaPredicted RBP20.27■□□□□ 0.84
SMG6-215ENST00000574501 ATAD2BQ9ULI0 1458 aa20.27■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms