Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP4Q8N3C7 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.19■□□□□ 0.66
CLIP4Q8N3C7 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP4Q8N3C7 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP4Q8N3C7 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.19■□□□□ 0.66
CLIP4Q8N3C7 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.19■□□□□ 0.66
CLIP4Q8N3C7 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.19■□□□□ 0.66
CLIP4Q8N3C7 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CLIP4Q8N3C7 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP4Q8N3C7 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP4Q8N3C7 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
CLIP4Q8N3C7 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.19■□□□□ 0.66
CLIP4Q8N3C7 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP4Q8N3C7 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP4Q8N3C7 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
CLIP4Q8N3C7 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 AC027612.3-201ENST00000413684 1047 ntBASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 FEM1AP1-201ENST00000431297 1995 ntBASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CLIP4Q8N3C7 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP4Q8N3C7 AP004607.4-201ENST00000530158 1459 ntBASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 KRT87P-202ENST00000534226 1464 ntBASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP4Q8N3C7 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.15■□□□□ 0.66
CLIP4Q8N3C7 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP4Q8N3C7 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CLIP4Q8N3C7 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.15■□□□□ 0.66
CLIP4Q8N3C7 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP4Q8N3C7 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.15■□□□□ 0.66
CLIP4Q8N3C7 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP4Q8N3C7 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP4Q8N3C7 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.15■□□□□ 0.66
CLIP4Q8N3C7 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms