Protein–RNA interactions for Protein: Q8IWZ4

TRIM48, Tripartite motif-containing protein 48, humanhuman

Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48Q8IWZ4 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM48Q8IWZ4 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM48Q8IWZ4 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM48Q8IWZ4 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.16■□□□□ 0.82
TRIM48Q8IWZ4 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.15■□□□□ 0.82
TRIM48Q8IWZ4 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM48Q8IWZ4 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.15■□□□□ 0.82
TRIM48Q8IWZ4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM48Q8IWZ4 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM48Q8IWZ4 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.15■□□□□ 0.82
TRIM48Q8IWZ4 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.15■□□□□ 0.82
TRIM48Q8IWZ4 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM48Q8IWZ4 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM48Q8IWZ4 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM48Q8IWZ4 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
TRIM48Q8IWZ4 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.15■□□□□ 0.82
TRIM48Q8IWZ4 AC007375.3-201ENST00000600936 2314 ntBASIC20.15■□□□□ 0.82
TRIM48Q8IWZ4 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.15■□□□□ 0.82
TRIM48Q8IWZ4 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM48Q8IWZ4 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM48Q8IWZ4 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 AC116050.2-201ENST00000612102 1779 ntBASIC20.13■□□□□ 0.81
TRIM48Q8IWZ4 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM48Q8IWZ4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM48Q8IWZ4 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.12■□□□□ 0.81
TRIM48Q8IWZ4 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.12■□□□□ 0.81
TRIM48Q8IWZ4 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
TRIM48Q8IWZ4 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.12■□□□□ 0.81
TRIM48Q8IWZ4 LSM12P1-201ENST00000411836 588 ntBASIC20.12■□□□□ 0.81
TRIM48Q8IWZ4 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
TRIM48Q8IWZ4 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.12■□□□□ 0.81
TRIM48Q8IWZ4 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.12■□□□□ 0.81
TRIM48Q8IWZ4 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.12■□□□□ 0.81
TRIM48Q8IWZ4 AC098934.4-201ENST00000564127 592 ntBASIC20.12■□□□□ 0.81
TRIM48Q8IWZ4 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.12■□□□□ 0.81
TRIM48Q8IWZ4 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRIM48Q8IWZ4 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.12■□□□□ 0.81
TRIM48Q8IWZ4 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 AC092118.2-201ENST00000613495 667 ntBASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.11■□□□□ 0.81
TRIM48Q8IWZ4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.1■□□□□ 0.81
TRIM48Q8IWZ4 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM48Q8IWZ4 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM48Q8IWZ4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM48Q8IWZ4 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM48Q8IWZ4 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms