Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.17■□□□□ 0.98
NEK3P51956 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.17■□□□□ 0.98
NEK3P51956 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.17■□□□□ 0.98
NEK3P51956 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.17■□□□□ 0.98
NEK3P51956 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.17■□□□□ 0.98
NEK3P51956 AC005181.1-201ENST00000604782 1256 ntBASIC21.17■□□□□ 0.98
NEK3P51956 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.17■□□□□ 0.98
NEK3P51956 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NEK3P51956 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NEK3P51956 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
NEK3P51956 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.17■□□□□ 0.98
NEK3P51956 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
NEK3P51956 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.17■□□□□ 0.98
NEK3P51956 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NEK3P51956 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
NEK3P51956 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.17■□□□□ 0.98
NEK3P51956 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
NEK3P51956 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NEK3P51956 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NEK3P51956 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NEK3P51956 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.16■□□□□ 0.98
NEK3P51956 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NEK3P51956 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NEK3P51956 KRT16P2-201ENST00000414673 1423 ntBASIC21.16■□□□□ 0.98
NEK3P51956 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.16■□□□□ 0.98
NEK3P51956 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
NEK3P51956 NCF1B-203ENST00000435988 1254 ntBASIC21.16■□□□□ 0.98
NEK3P51956 CNN2P6-201ENST00000439038 900 ntBASIC21.16■□□□□ 0.98
NEK3P51956 TERF1P5-201ENST00000477545 1207 ntBASIC21.16■□□□□ 0.98
NEK3P51956 AC013268.1-206ENST00000638368 961 ntBASIC21.16■□□□□ 0.98
NEK3P51956 AC112229.1-201ENST00000639295 961 ntBASIC21.16■□□□□ 0.98
NEK3P51956 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NEK3P51956 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NEK3P51956 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NEK3P51956 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NEK3P51956 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NEK3P51956 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.15■□□□□ 0.98
NEK3P51956 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NEK3P51956 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NEK3P51956 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NEK3P51956 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
NEK3P51956 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NEK3P51956 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.15■□□□□ 0.98
NEK3P51956 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.15■□□□□ 0.98
NEK3P51956 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.15■□□□□ 0.98
NEK3P51956 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NEK3P51956 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
NEK3P51956 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NEK3P51956 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NEK3P51956 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.15■□□□□ 0.98
NEK3P51956 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
NEK3P51956 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NEK3P51956 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
NEK3P51956 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NEK3P51956 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.14■□□□□ 0.97
NEK3P51956 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
NEK3P51956 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
NEK3P51956 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.14■□□□□ 0.97
NEK3P51956 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NEK3P51956 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.14■□□□□ 0.97
NEK3P51956 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.14■□□□□ 0.97
NEK3P51956 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.14■□□□□ 0.97
NEK3P51956 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.14■□□□□ 0.97
NEK3P51956 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
NEK3P51956 AL050303.2-201ENST00000619798 666 ntBASIC21.14■□□□□ 0.97
NEK3P51956 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NEK3P51956 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NEK3P51956 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NEK3P51956 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.14■□□□□ 0.97
NEK3P51956 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NEK3P51956 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
NEK3P51956 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
NEK3P51956 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
NEK3P51956 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NEK3P51956 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NEK3P51956 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.13■□□□□ 0.97
NEK3P51956 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.13■□□□□ 0.97
NEK3P51956 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
NEK3P51956 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
NEK3P51956 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NEK3P51956 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.13■□□□□ 0.97
NEK3P51956 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NEK3P51956 AC104771.1-201ENST00000603335 964 ntBASIC21.13■□□□□ 0.97
NEK3P51956 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.13■□□□□ 0.97
NEK3P51956 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NEK3P51956 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NEK3P51956 AC061975.6-201ENST00000579045 1553 ntBASIC21.13■□□□□ 0.97
NEK3P51956 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NEK3P51956 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NEK3P51956 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NEK3P51956 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.12■□□□□ 0.97
NEK3P51956 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.12■□□□□ 0.97
NEK3P51956 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NEK3P51956 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK3P51956 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK3P51956 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK3P51956 GPX1P1-201ENST00000388829 606 ntBASIC21.12■□□□□ 0.97
NEK3P51956 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK3P51956 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.12■□□□□ 0.97
NEK3P51956 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms