Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX3P48380 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX3P48380 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX3P48380 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX3P48380 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
RFX3P48380 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
RFX3P48380 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.27■□□□□ 0.67
RFX3P48380 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RFX3P48380 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
RFX3P48380 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.26■□□□□ 0.67
RFX3P48380 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX3P48380 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX3P48380 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RFX3P48380 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX3P48380 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX3P48380 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
RFX3P48380 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.26■□□□□ 0.67
RFX3P48380 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.26■□□□□ 0.67
RFX3P48380 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.26■□□□□ 0.67
RFX3P48380 AL121603.2-201ENST00000557373 2117 ntBASIC19.26■□□□□ 0.67
RFX3P48380 UBE2DNL-204ENST00000602536 740 ntBASIC19.26■□□□□ 0.67
RFX3P48380 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.26■□□□□ 0.67
RFX3P48380 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
RFX3P48380 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.26■□□□□ 0.67
RFX3P48380 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX3P48380 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX3P48380 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX3P48380 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RFX3P48380 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX3P48380 KRT16P2-201ENST00000414673 1423 ntBASIC19.25■□□□□ 0.67
RFX3P48380 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
RFX3P48380 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
RFX3P48380 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.25■□□□□ 0.67
RFX3P48380 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
RFX3P48380 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.25■□□□□ 0.67
RFX3P48380 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.25■□□□□ 0.67
RFX3P48380 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
RFX3P48380 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX3P48380 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX3P48380 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
RFX3P48380 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
RFX3P48380 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFX3P48380 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.24■□□□□ 0.67
RFX3P48380 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFX3P48380 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFX3P48380 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.24■□□□□ 0.67
RFX3P48380 AC016769.1-201ENST00000409132 1010 ntBASIC19.24■□□□□ 0.67
RFX3P48380 AC245052.3-201ENST00000450182 901 ntBASIC19.24■□□□□ 0.67
RFX3P48380 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.24■□□□□ 0.67
RFX3P48380 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.24■□□□□ 0.67
RFX3P48380 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX3P48380 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
RFX3P48380 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX3P48380 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFX3P48380 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX3P48380 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.23■□□□□ 0.67
RFX3P48380 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX3P48380 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX3P48380 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFX3P48380 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX3P48380 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFX3P48380 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX3P48380 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.23■□□□□ 0.67
RFX3P48380 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
RFX3P48380 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.23■□□□□ 0.67
RFX3P48380 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFX3P48380 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.23■□□□□ 0.67
RFX3P48380 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.23■□□□□ 0.67
RFX3P48380 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX3P48380 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX3P48380 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
RFX3P48380 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX3P48380 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.23■□□□□ 0.67
RFX3P48380 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
RFX3P48380 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX3P48380 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX3P48380 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
RFX3P48380 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
RFX3P48380 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFX3P48380 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
RFX3P48380 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFX3P48380 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RFX3P48380 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.22■□□□□ 0.67
RFX3P48380 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms