Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC120498.8-201ENST00000614275 531 ntBASIC34.88■■■■□ 3.17
CUX1P39880 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC34.88■■■■□ 3.17
CUX1P39880 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC34.88■■■■□ 3.17
CUX1P39880 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC34.87■■■■□ 3.17
CUX1P39880 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC34.87■■■■□ 3.17
CUX1P39880 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC34.87■■■■□ 3.17
CUX1P39880 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC34.87■■■■□ 3.17
CUX1P39880 RARRES2P10-201ENST00000564312 460 ntBASIC34.87■■■■□ 3.17
CUX1P39880 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC34.87■■■■□ 3.17
CUX1P39880 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC34.87■■■■□ 3.17
CUX1P39880 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
CUX1P39880 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC34.87■■■■□ 3.17
CUX1P39880 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
CUX1P39880 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC34.86■■■■□ 3.17
CUX1P39880 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC34.86■■■■□ 3.17
CUX1P39880 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC34.86■■■■□ 3.17
CUX1P39880 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC34.86■■■■□ 3.17
CUX1P39880 AC110285.5-201ENST00000611501 352 ntBASIC34.86■■■■□ 3.17
CUX1P39880 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
CUX1P39880 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
CUX1P39880 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
CUX1P39880 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC34.86■■■■□ 3.17
CUX1P39880 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC34.86■■■■□ 3.17
CUX1P39880 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC34.86■■■■□ 3.17
CUX1P39880 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC34.86■■■■□ 3.17
CUX1P39880 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC34.85■■■■□ 3.17
CUX1P39880 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC34.85■■■■□ 3.17
CUX1P39880 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC34.85■■■■□ 3.17
CUX1P39880 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC34.85■■■■□ 3.17
CUX1P39880 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC34.84■■■■□ 3.17
CUX1P39880 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC34.84■■■■□ 3.17
CUX1P39880 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC34.84■■■■□ 3.17
CUX1P39880 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC34.84■■■■□ 3.17
CUX1P39880 GRAP-204ENST00000573099 846 ntTSL 3 BASIC34.84■■■■□ 3.17
CUX1P39880 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
CUX1P39880 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
CUX1P39880 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC34.84■■■■□ 3.17
CUX1P39880 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC34.84■■■■□ 3.17
CUX1P39880 KRT17P2-201ENST00000300992 1314 ntBASIC34.84■■■■□ 3.17
CUX1P39880 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
CUX1P39880 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
CUX1P39880 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
CUX1P39880 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
CUX1P39880 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC34.83■■■■□ 3.17
CUX1P39880 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC34.83■■■■□ 3.17
CUX1P39880 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
CUX1P39880 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC34.83■■■■□ 3.17
CUX1P39880 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
CUX1P39880 AC006557.6-201ENST00000623071 864 ntBASIC34.83■■■■□ 3.17
CUX1P39880 AC133561.5-201ENST00000635547 218 ntBASIC34.83■■■■□ 3.17
CUX1P39880 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC34.83■■■■□ 3.17
CUX1P39880 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC34.83■■■■□ 3.17
CUX1P39880 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
CUX1P39880 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC34.82■■■■□ 3.16
CUX1P39880 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC34.82■■■■□ 3.16
CUX1P39880 AL356652.1-201ENST00000615962 565 ntBASIC34.82■■■■□ 3.16
CUX1P39880 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC34.82■■■■□ 3.16
CUX1P39880 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC34.82■■■■□ 3.16
CUX1P39880 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
CUX1P39880 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC34.81■■■■□ 3.16
CUX1P39880 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC34.81■■■■□ 3.16
CUX1P39880 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC34.81■■■■□ 3.16
CUX1P39880 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC34.81■■■■□ 3.16
CUX1P39880 C1orf229-201ENST00000623686 2258 ntBASIC34.81■■■■□ 3.16
CUX1P39880 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
CUX1P39880 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC34.81■■■■□ 3.16
CUX1P39880 AL135905.2-201ENST00000584934 1404 ntBASIC34.81■■■■□ 3.16
CUX1P39880 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
CUX1P39880 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC34.81■■■■□ 3.16
CUX1P39880 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC34.81■■■■□ 3.16
CUX1P39880 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC34.81■■■■□ 3.16
CUX1P39880 AL353708.3-201ENST00000610272 989 ntBASIC34.81■■■■□ 3.16
CUX1P39880 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC34.81■■■■□ 3.16
CUX1P39880 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
CUX1P39880 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
CUX1P39880 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC34.8■■■■□ 3.16
CUX1P39880 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC34.8■■■■□ 3.16
CUX1P39880 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC34.8■■■■□ 3.16
CUX1P39880 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
CUX1P39880 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC34.8■■■■□ 3.16
CUX1P39880 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC34.8■■■■□ 3.16
CUX1P39880 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC34.8■■■■□ 3.16
CUX1P39880 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
CUX1P39880 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
CUX1P39880 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC34.79■■■■□ 3.16
CUX1P39880 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
CUX1P39880 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC34.79■■■■□ 3.16
CUX1P39880 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
CUX1P39880 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC34.79■■■■□ 3.16
CUX1P39880 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC34.79■■■■□ 3.16
CUX1P39880 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC34.78■■■■□ 3.16
CUX1P39880 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
CUX1P39880 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC34.78■■■■□ 3.16
CUX1P39880 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
CUX1P39880 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
CUX1P39880 RER1-204ENST00000378518 522 ntTSL 3 BASIC34.78■■■■□ 3.16
CUX1P39880 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC34.78■■■■□ 3.16
CUX1P39880 PRKY-204ENST00000533551 1019 ntBASIC34.78■■■■□ 3.16
CUX1P39880 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC34.78■■■■□ 3.16
CUX1P39880 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC34.78■■■■□ 3.16
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms