Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
PCNAP12004 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
PCNAP12004 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PCNAP12004 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCNAP12004 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PCNAP12004 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCNAP12004 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCNAP12004 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PCNAP12004 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PCNAP12004 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PCNAP12004 AC034268.1-201ENST00000441047 882 ntBASIC19.96■□□□□ 0.79
PCNAP12004 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.96■□□□□ 0.79
PCNAP12004 AC087623.3-201ENST00000607047 1098 ntBASIC19.96■□□□□ 0.79
PCNAP12004 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
PCNAP12004 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCNAP12004 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.96■□□□□ 0.79
PCNAP12004 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
PCNAP12004 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PCNAP12004 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.96■□□□□ 0.79
PCNAP12004 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PCNAP12004 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
PCNAP12004 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
PCNAP12004 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCNAP12004 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
PCNAP12004 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCNAP12004 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCNAP12004 AC006128.1-201ENST00000624704 1661 ntBASIC19.95■□□□□ 0.78
PCNAP12004 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PCNAP12004 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.95■□□□□ 0.78
PCNAP12004 KRT19P1-201ENST00000405746 1186 ntBASIC19.95■□□□□ 0.78
PCNAP12004 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.95■□□□□ 0.78
PCNAP12004 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCNAP12004 AC245052.3-201ENST00000450182 901 ntBASIC19.95■□□□□ 0.78
PCNAP12004 MIR6821-201ENST00000617625 74 ntBASIC19.95■□□□□ 0.78
PCNAP12004 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.95■□□□□ 0.78
PCNAP12004 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.95■□□□□ 0.78
PCNAP12004 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PCNAP12004 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PCNAP12004 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.95■□□□□ 0.78
PCNAP12004 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCNAP12004 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCNAP12004 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PCNAP12004 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
PCNAP12004 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PCNAP12004 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCNAP12004 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCNAP12004 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCNAP12004 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCNAP12004 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.94■□□□□ 0.78
PCNAP12004 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCNAP12004 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
PCNAP12004 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.94■□□□□ 0.78
PCNAP12004 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
PCNAP12004 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PCNAP12004 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.94■□□□□ 0.78
PCNAP12004 NTF6G-201ENST00000591094 616 ntBASIC19.94■□□□□ 0.78
PCNAP12004 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PCNAP12004 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCNAP12004 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.93■□□□□ 0.78
PCNAP12004 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCNAP12004 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCNAP12004 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCNAP12004 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCNAP12004 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCNAP12004 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCNAP12004 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCNAP12004 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCNAP12004 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCNAP12004 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
PCNAP12004 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCNAP12004 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.93■□□□□ 0.78
PCNAP12004 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCNAP12004 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.93■□□□□ 0.78
PCNAP12004 KRT18P61-201ENST00000585825 1298 ntBASIC19.93■□□□□ 0.78
PCNAP12004 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCNAP12004 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCNAP12004 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCNAP12004 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCNAP12004 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.93■□□□□ 0.78
PCNAP12004 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.93■□□□□ 0.78
PCNAP12004 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
PCNAP12004 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCNAP12004 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCNAP12004 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCNAP12004 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
PCNAP12004 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.92■□□□□ 0.78
PCNAP12004 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCNAP12004 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.92■□□□□ 0.78
PCNAP12004 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCNAP12004 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCNAP12004 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.92■□□□□ 0.78
PCNAP12004 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCNAP12004 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCNAP12004 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
PCNAP12004 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.92■□□□□ 0.78
PCNAP12004 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.92■□□□□ 0.78
PCNAP12004 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCNAP12004 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.92■□□□□ 0.78
PCNAP12004 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.92■□□□□ 0.78
PCNAP12004 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms