Protein–RNA interactions for Protein: P0CH09

RPL40B, Ubiquitin-60S ribosomal protein L40, yeastyeast

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPL40BP0CH09 SLY41YOR307C 1362 nt1.37□□□□□ -2.19
RPL40BP0CH09 PET100YDR079W 336 nt1.37□□□□□ -2.19
RPL40BP0CH09 SDC1YDR469W 528 nt1.37□□□□□ -2.19
RPL40BP0CH09 RNP1YLL046C 750 nt1.37□□□□□ -2.19
RPL40BP0CH09 ERG29YMR134W 714 nt1.37□□□□□ -2.19
RPL40BP0CH09 YOR114WYOR114W 885 nt1.37□□□□□ -2.19
RPL40BP0CH09 VPS28YPL065W 729 nt1.37□□□□□ -2.19
RPL40BP0CH09 YRO2YBR054W 1035 nt1.37□□□□□ -2.19
RPL40BP0CH09 YBR174CYBR174C 315 nt1.37□□□□□ -2.19
RPL40BP0CH09 YJR003CYJR003C 1560 nt1.37□□□□□ -2.19
RPL40BP0CH09 MUB1YMR100W 1863 nt1.37□□□□□ -2.19
RPL40BP0CH09 UFD2YDL190C 2886 nt1.37□□□□□ -2.19
RPL40BP0CH09 PUF4YGL014W 2667 nt1.36□□□□□ -2.19
RPL40BP0CH09 AI3Q0060 1248 nt1.36□□□□□ -2.19
RPL40BP0CH09 YDR115WYDR115W 318 nt1.36□□□□□ -2.19
RPL40BP0CH09 tH(GUG)E1tH(GUG)E1 72 nt1.36□□□□□ -2.19
RPL40BP0CH09 tH(GUG)E2tH(GUG)E2 72 nt1.36□□□□□ -2.19
RPL40BP0CH09 tH(GUG)G1tH(GUG)G1 72 nt1.36□□□□□ -2.19
RPL40BP0CH09 tH(GUG)G2tH(GUG)G2 72 nt1.36□□□□□ -2.19
RPL40BP0CH09 tH(GUG)HtH(GUG)H 72 nt1.36□□□□□ -2.19
RPL40BP0CH09 tH(GUG)KtH(GUG)K 72 nt1.36□□□□□ -2.19
RPL40BP0CH09 tH(GUG)MtH(GUG)M 72 nt1.36□□□□□ -2.19
RPL40BP0CH09 UPF3YGR072W 1164 nt1.36□□□□□ -2.19
RPL40BP0CH09 CAP1YKL007W 807 nt1.36□□□□□ -2.19
RPL40BP0CH09 RPB11YOL005C 363 nt1.36□□□□□ -2.19
RPL40BP0CH09 ZRG17YNR039C 1818 nt1.36□□□□□ -2.19
RPL40BP0CH09 CBF2YGR140W 2871 nt1.35□□□□□ -2.19
RPL40BP0CH09 RPL35BYDL136W 363 nt1.35□□□□□ -2.19
RPL40BP0CH09 DDI2YFL061W 678 nt1.35□□□□□ -2.19
RPL40BP0CH09 YIR036W-AYIR036W-A 402 nt1.35□□□□□ -2.19
RPL40BP0CH09 APA1YCL050C 966 nt1.35□□□□□ -2.19
RPL40BP0CH09 LST4YKL176C 2487 nt1.35□□□□□ -2.19
RPL40BP0CH09 FUS1YCL027W 1539 nt1.35□□□□□ -2.19
RPL40BP0CH09 ATG9YDL149W 2994 nt1.35□□□□□ -2.19
RPL40BP0CH09 BIR1YJR089W 2865 nt1.34□□□□□ -2.19
RPL40BP0CH09 snR68snR68 136 nt1.34□□□□□ -2.19
RPL40BP0CH09 UBC13YDR092W 462 nt1.34□□□□□ -2.19
RPL40BP0CH09 YER107W-AYER107W-A 321 nt1.34□□□□□ -2.19
RPL40BP0CH09 tV(UAC)BtV(UAC)B 74 nt1.34□□□□□ -2.19
RPL40BP0CH09 tV(UAC)DtV(UAC)D 74 nt1.34□□□□□ -2.19
RPL40BP0CH09 YML047W-AYML047W-A 366 nt1.34□□□□□ -2.19
RPL40BP0CH09 YBL096CYBL096C 309 nt1.34□□□□□ -2.19
RPL40BP0CH09 NGL1YOL042W 1092 nt1.34□□□□□ -2.19
RPL40BP0CH09 GRX1YCL035C 333 nt1.34□□□□□ -2.19
RPL40BP0CH09 UTP8YGR128C 2142 nt1.33□□□□□ -2.2
RPL40BP0CH09 SPO75YLL005C 2607 nt1.33□□□□□ -2.2
RPL40BP0CH09 LSM6YDR378C 261 nt1.33□□□□□ -2.2
RPL40BP0CH09 ACB1YGR037C 264 nt1.33□□□□□ -2.2
RPL40BP0CH09 AIM18YHR198C 966 nt1.33□□□□□ -2.2
RPL40BP0CH09 SPO20YMR017W 1194 nt1.33□□□□□ -2.2
RPL40BP0CH09 YOL162WYOL162W 648 nt1.33□□□□□ -2.2
RPL40BP0CH09 JJJ2YJL162C 1752 nt1.33□□□□□ -2.2
RPL40BP0CH09 BPH1YCR032W 6504 nt1.33□□□□□ -2.2
RPL40BP0CH09 SPT14YPL175W 1359 nt1.33□□□□□ -2.2
RPL40BP0CH09 tQ(UUG)E2tQ(UUG)E2 72 nt1.32□□□□□ -2.2
RPL40BP0CH09 YML084WYML084W 309 nt1.32□□□□□ -2.2
RPL40BP0CH09 YMR099CYMR099C 894 nt1.32□□□□□ -2.2
RPL40BP0CH09 RGM1YMR182C 636 nt1.32□□□□□ -2.2
RPL40BP0CH09 YMR321CYMR321C 318 nt1.32□□□□□ -2.2
RPL40BP0CH09 CCL1YPR025C 1182 nt1.32□□□□□ -2.2
RPL40BP0CH09 YPR074W-AYPR074W-A 171 nt1.32□□□□□ -2.2
RPL40BP0CH09 PET127YOR017W 2403 nt1.32□□□□□ -2.2
RPL40BP0CH09 UBP3YER151C 2739 nt1.31□□□□□ -2.2
RPL40BP0CH09 GPM2YDL021W 936 nt1.31□□□□□ -2.2
RPL40BP0CH09 DIG2YDR480W 972 nt1.31□□□□□ -2.2
RPL40BP0CH09 SEC4YFL005W 648 nt1.31□□□□□ -2.2
RPL40BP0CH09 YIL058WYIL058W 285 nt1.31□□□□□ -2.2
RPL40BP0CH09 RPA34YJL148W 702 nt1.31□□□□□ -2.2
RPL40BP0CH09 TPK3YKL166C 1197 nt1.31□□□□□ -2.2
RPL40BP0CH09 ATG10YLL042C 504 nt1.31□□□□□ -2.2
RPL40BP0CH09 SEN15YMR059W 387 nt1.31□□□□□ -2.2
RPL40BP0CH09 MRPL44YMR225C 297 nt1.31□□□□□ -2.2
RPL40BP0CH09 YIP3YNL044W 531 nt1.31□□□□□ -2.2
RPL40BP0CH09 IAH1YOR126C 717 nt1.31□□□□□ -2.2
RPL40BP0CH09 YDL026WYDL026W 312 nt1.3□□□□□ -2.2
RPL40BP0CH09 CSM2YIL132C 642 nt1.3□□□□□ -2.2
RPL40BP0CH09 VTI1YMR197C 654 nt1.3□□□□□ -2.2
RPL40BP0CH09 TUS1YLR425W 3924 nt1.3□□□□□ -2.2
RPL40BP0CH09 RUD3YOR216C 1455 nt1.3□□□□□ -2.2
RPL40BP0CH09 SPC110YDR356W 2835 nt1.29□□□□□ -2.2
RPL40BP0CH09 YCR015CYCR015C 954 nt1.29□□□□□ -2.2
RPL40BP0CH09 YDL163WYDL163W 303 nt1.29□□□□□ -2.2
RPL40BP0CH09 IRC4YDR540C 540 nt1.29□□□□□ -2.2
RPL40BP0CH09 YER189WYER189W 369 nt1.29□□□□□ -2.2
RPL40BP0CH09 CKA1YIL035C 1119 nt1.29□□□□□ -2.2
RPL40BP0CH09 PDS5YMR076C 3834 nt1.29□□□□□ -2.2
RPL40BP0CH09 YPR145C-AYPR145C-A 237 nt1.29□□□□□ -2.2
RPL40BP0CH09 snR35snR35 204 nt1.29□□□□□ -2.2
RPL40BP0CH09 BAS1YKR099W 2436 nt1.29□□□□□ -2.2
RPL40BP0CH09 DSE1YER124C 1722 nt1.29□□□□□ -2.2
RPL40BP0CH09 CAT2YML042W 2013 nt1.28□□□□□ -2.2
RPL40BP0CH09 YMR31YFR049W 372 nt1.28□□□□□ -2.2
RPL40BP0CH09 YHL044WYHL044W 708 nt1.28□□□□□ -2.2
RPL40BP0CH09 PAM16YJL104W 450 nt1.28□□□□□ -2.2
RPL40BP0CH09 MRP49YKL167C 414 nt1.28□□□□□ -2.2
RPL40BP0CH09 YLR379WYLR379W 375 nt1.28□□□□□ -2.2
RPL40BP0CH09 LSM2YBL026W 288 nt1.28□□□□□ -2.2
RPL40BP0CH09 YBR013CYBR013C 390 nt1.28□□□□□ -2.2
RPL40BP0CH09 YPR014CYPR014C 330 nt1.28□□□□□ -2.2
RPL40BP0CH09 snR191snR191 274 nt1.28□□□□□ -2.2
Retrieved 100 of 7,029 protein–RNA pairs in 45.1 ms