Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
COL4A1P02462 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
COL4A1P02462 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
COL4A1P02462 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
COL4A1P02462 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC25.4■■□□□ 1.66
COL4A1P02462 REXO2-208ENST00000539754 791 ntTSL 2 BASIC25.4■■□□□ 1.66
COL4A1P02462 REXO2-216ENST00000544196 452 ntTSL 3 BASIC25.4■■□□□ 1.66
COL4A1P02462 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC25.4■■□□□ 1.66
COL4A1P02462 AP006294.2-201ENST00000641667 209 ntBASIC25.4■■□□□ 1.66
COL4A1P02462 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC25.4■■□□□ 1.66
COL4A1P02462 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
COL4A1P02462 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
COL4A1P02462 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.66
COL4A1P02462 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
COL4A1P02462 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC25.39■■□□□ 1.66
COL4A1P02462 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
COL4A1P02462 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.66
COL4A1P02462 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
COL4A1P02462 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.66
COL4A1P02462 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC25.39■■□□□ 1.65
COL4A1P02462 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC25.39■■□□□ 1.65
COL4A1P02462 SERF2-207ENST00000409614 582 ntTSL 2 BASIC25.39■■□□□ 1.65
COL4A1P02462 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
COL4A1P02462 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC25.39■■□□□ 1.65
COL4A1P02462 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC25.39■■□□□ 1.65
COL4A1P02462 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
COL4A1P02462 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC25.38■■□□□ 1.65
COL4A1P02462 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC25.38■■□□□ 1.65
COL4A1P02462 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
COL4A1P02462 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
COL4A1P02462 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
COL4A1P02462 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
COL4A1P02462 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
COL4A1P02462 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC25.38■■□□□ 1.65
COL4A1P02462 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
COL4A1P02462 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
COL4A1P02462 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC25.38■■□□□ 1.65
COL4A1P02462 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
COL4A1P02462 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
COL4A1P02462 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
COL4A1P02462 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
COL4A1P02462 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC25.37■■□□□ 1.65
COL4A1P02462 RN7SL471P-201ENST00000580476 299 ntBASIC25.37■■□□□ 1.65
COL4A1P02462 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
COL4A1P02462 Z99916.2-201ENST00000604037 246 ntBASIC25.37■■□□□ 1.65
COL4A1P02462 AL356652.1-201ENST00000615962 565 ntBASIC25.37■■□□□ 1.65
COL4A1P02462 FAM197Y4-202ENST00000622692 608 ntBASIC25.37■■□□□ 1.65
COL4A1P02462 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
COL4A1P02462 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
COL4A1P02462 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
COL4A1P02462 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
COL4A1P02462 MOK-233ENST00000524214 1539 ntTSL 2 BASIC25.37■■□□□ 1.65
COL4A1P02462 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
COL4A1P02462 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
COL4A1P02462 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
COL4A1P02462 UBE2SP1-201ENST00000450587 669 ntBASIC25.36■■□□□ 1.65
COL4A1P02462 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC25.36■■□□□ 1.65
COL4A1P02462 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC25.36■■□□□ 1.65
COL4A1P02462 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC25.36■■□□□ 1.65
COL4A1P02462 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
COL4A1P02462 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
COL4A1P02462 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
COL4A1P02462 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
COL4A1P02462 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
COL4A1P02462 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
COL4A1P02462 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
COL4A1P02462 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
COL4A1P02462 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
COL4A1P02462 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
COL4A1P02462 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL4A1P02462 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
COL4A1P02462 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
COL4A1P02462 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC25.35■■□□□ 1.65
COL4A1P02462 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC25.35■■□□□ 1.65
COL4A1P02462 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC25.35■■□□□ 1.65
COL4A1P02462 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL4A1P02462 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC25.35■■□□□ 1.65
COL4A1P02462 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL4A1P02462 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC25.34■■□□□ 1.65
COL4A1P02462 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
COL4A1P02462 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC25.34■■□□□ 1.65
COL4A1P02462 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC25.34■■□□□ 1.65
COL4A1P02462 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
COL4A1P02462 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
COL4A1P02462 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
COL4A1P02462 MDFI-202ENST00000373050 809 ntTSL 2 BASIC25.34■■□□□ 1.65
COL4A1P02462 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
COL4A1P02462 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC25.34■■□□□ 1.65
COL4A1P02462 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC25.34■■□□□ 1.65
COL4A1P02462 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
COL4A1P02462 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
COL4A1P02462 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
COL4A1P02462 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC25.34■■□□□ 1.65
COL4A1P02462 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
COL4A1P02462 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL4A1P02462 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
COL4A1P02462 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL4A1P02462 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
COL4A1P02462 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC25.33■■□□□ 1.65
COL4A1P02462 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC25.33■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms