Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AP005212.1-201ENST00000581547 1997 ntBASIC19.79■□□□□ 0.76
LDLRP01130 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.79■□□□□ 0.76
LDLRP01130 RNF165-205ENST00000588679 2904 ntBASIC19.79■□□□□ 0.76
LDLRP01130 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
LDLRP01130 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.78■□□□□ 0.76
LDLRP01130 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LDLRP01130 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.78■□□□□ 0.76
LDLRP01130 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LDLRP01130 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LDLRP01130 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.78■□□□□ 0.76
LDLRP01130 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LDLRP01130 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LDLRP01130 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LDLRP01130 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.78■□□□□ 0.76
LDLRP01130 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LDLRP01130 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LDLRP01130 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LDLRP01130 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LDLRP01130 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.78■□□□□ 0.76
LDLRP01130 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.78■□□□□ 0.76
LDLRP01130 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LDLRP01130 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.77■□□□□ 0.76
LDLRP01130 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LDLRP01130 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LDLRP01130 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LDLRP01130 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LDLRP01130 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LDLRP01130 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LDLRP01130 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
LDLRP01130 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.77■□□□□ 0.76
LDLRP01130 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LDLRP01130 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LDLRP01130 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LDLRP01130 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LDLRP01130 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.77■□□□□ 0.76
LDLRP01130 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.77■□□□□ 0.76
LDLRP01130 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
LDLRP01130 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
LDLRP01130 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
LDLRP01130 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.77■□□□□ 0.75
LDLRP01130 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LDLRP01130 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.76■□□□□ 0.75
LDLRP01130 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.76■□□□□ 0.75
LDLRP01130 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
LDLRP01130 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LDLRP01130 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.76■□□□□ 0.75
LDLRP01130 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LDLRP01130 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LDLRP01130 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LDLRP01130 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.76■□□□□ 0.75
LDLRP01130 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.76■□□□□ 0.75
LDLRP01130 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.76■□□□□ 0.75
LDLRP01130 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LDLRP01130 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.76■□□□□ 0.75
LDLRP01130 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
LDLRP01130 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.76■□□□□ 0.75
LDLRP01130 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
LDLRP01130 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LDLRP01130 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LDLRP01130 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LDLRP01130 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
LDLRP01130 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LDLRP01130 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
LDLRP01130 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.75■□□□□ 0.75
LDLRP01130 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
LDLRP01130 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
LDLRP01130 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LDLRP01130 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.75■□□□□ 0.75
LDLRP01130 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.75■□□□□ 0.75
LDLRP01130 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.75■□□□□ 0.75
LDLRP01130 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LDLRP01130 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.75■□□□□ 0.75
LDLRP01130 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
LDLRP01130 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
LDLRP01130 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LDLRP01130 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LDLRP01130 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LDLRP01130 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.75■□□□□ 0.75
LDLRP01130 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LDLRP01130 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LDLRP01130 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LDLRP01130 AP004607.4-201ENST00000530158 1459 ntBASIC19.74■□□□□ 0.75
LDLRP01130 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.74■□□□□ 0.75
LDLRP01130 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LDLRP01130 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LDLRP01130 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LDLRP01130 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
LDLRP01130 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
LDLRP01130 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LDLRP01130 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LDLRP01130 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LDLRP01130 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.74■□□□□ 0.75
LDLRP01130 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
LDLRP01130 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
LDLRP01130 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.74■□□□□ 0.75
LDLRP01130 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.74■□□□□ 0.75
LDLRP01130 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.74■□□□□ 0.75
LDLRP01130 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.74■□□□□ 0.75
LDLRP01130 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
LDLRP01130 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms