Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.89■□□□□ 0.93
PDGFBP01127 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
PDGFBP01127 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.89■□□□□ 0.93
PDGFBP01127 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PDGFBP01127 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
PDGFBP01127 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.89■□□□□ 0.93
PDGFBP01127 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.88■□□□□ 0.93
PDGFBP01127 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PDGFBP01127 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PDGFBP01127 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PDGFBP01127 LINC01568-207ENST00000641790 1380 ntBASIC20.88■□□□□ 0.93
PDGFBP01127 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDGFBP01127 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDGFBP01127 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.88■□□□□ 0.93
PDGFBP01127 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.88■□□□□ 0.93
PDGFBP01127 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDGFBP01127 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.88■□□□□ 0.93
PDGFBP01127 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.88■□□□□ 0.93
PDGFBP01127 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
PDGFBP01127 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDGFBP01127 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PDGFBP01127 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDGFBP01127 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFBP01127 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFBP01127 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFBP01127 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
PDGFBP01127 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFBP01127 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.87■□□□□ 0.93
PDGFBP01127 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.87■□□□□ 0.93
PDGFBP01127 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFBP01127 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFBP01127 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFBP01127 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.87■□□□□ 0.93
PDGFBP01127 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFBP01127 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
PDGFBP01127 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.87■□□□□ 0.93
PDGFBP01127 AC087388.1-201ENST00000571370 1112 ntBASIC20.87■□□□□ 0.93
PDGFBP01127 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.87■□□□□ 0.93
PDGFBP01127 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
PDGFBP01127 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.87■□□□□ 0.93
PDGFBP01127 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
PDGFBP01127 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFBP01127 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PDGFBP01127 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.86■□□□□ 0.93
PDGFBP01127 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.86■□□□□ 0.93
PDGFBP01127 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.86■□□□□ 0.93
PDGFBP01127 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFBP01127 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.86■□□□□ 0.93
PDGFBP01127 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.86■□□□□ 0.93
PDGFBP01127 AC104076.2-201ENST00000448912 469 ntBASIC20.86■□□□□ 0.93
PDGFBP01127 DUX4L26-201ENST00000489078 1255 ntBASIC20.86■□□□□ 0.93
PDGFBP01127 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.86■□□□□ 0.93
PDGFBP01127 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.86■□□□□ 0.93
PDGFBP01127 AL121894.2-201ENST00000602977 491 ntBASIC20.86■□□□□ 0.93
PDGFBP01127 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.86■□□□□ 0.93
PDGFBP01127 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
PDGFBP01127 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFBP01127 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFBP01127 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFBP01127 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PDGFBP01127 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.86■□□□□ 0.93
PDGFBP01127 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.86■□□□□ 0.93
PDGFBP01127 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.86■□□□□ 0.93
PDGFBP01127 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.86■□□□□ 0.93
PDGFBP01127 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFBP01127 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFBP01127 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
PDGFBP01127 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.85■□□□□ 0.93
PDGFBP01127 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFBP01127 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFBP01127 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFBP01127 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFBP01127 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFBP01127 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFBP01127 MIR1238-201ENST00000408483 83 ntBASIC20.85■□□□□ 0.93
PDGFBP01127 AL137013.1-201ENST00000432946 1228 ntBASIC20.85■□□□□ 0.93
PDGFBP01127 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC20.85■□□□□ 0.93
PDGFBP01127 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.85■□□□□ 0.93
PDGFBP01127 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.85■□□□□ 0.93
PDGFBP01127 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.85■□□□□ 0.93
PDGFBP01127 AC073508.3-201ENST00000619697 1419 ntBASIC20.85■□□□□ 0.93
PDGFBP01127 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFBP01127 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFBP01127 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PDGFBP01127 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFBP01127 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFBP01127 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFBP01127 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.84■□□□□ 0.93
PDGFBP01127 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.84■□□□□ 0.93
PDGFBP01127 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFBP01127 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFBP01127 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.84■□□□□ 0.93
PDGFBP01127 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFBP01127 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFBP01127 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
PDGFBP01127 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFBP01127 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDGFBP01127 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.83■□□□□ 0.93
PDGFBP01127 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PDGFBP01127 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms