Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CNOT4O95628 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNOT4O95628 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNOT4O95628 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.24■□□□□ 0.51
CNOT4O95628 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CNOT4O95628 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNOT4O95628 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CNOT4O95628 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNOT4O95628 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CNOT4O95628 AC007322.3-201ENST00000426526 701 ntBASIC18.24■□□□□ 0.51
CNOT4O95628 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNOT4O95628 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.24■□□□□ 0.51
CNOT4O95628 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.24■□□□□ 0.51
CNOT4O95628 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.24■□□□□ 0.51
CNOT4O95628 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CNOT4O95628 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CNOT4O95628 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC18.24■□□□□ 0.51
CNOT4O95628 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CNOT4O95628 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CNOT4O95628 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CNOT4O95628 AC116050.2-201ENST00000612102 1779 ntBASIC18.24■□□□□ 0.51
CNOT4O95628 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CNOT4O95628 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
CNOT4O95628 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CNOT4O95628 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNOT4O95628 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNOT4O95628 FBXW4P1-201ENST00000426721 2239 ntBASIC18.23■□□□□ 0.51
CNOT4O95628 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CNOT4O95628 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNOT4O95628 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CNOT4O95628 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CNOT4O95628 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
CNOT4O95628 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNOT4O95628 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNOT4O95628 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
CNOT4O95628 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.23■□□□□ 0.51
CNOT4O95628 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CNOT4O95628 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.23■□□□□ 0.51
CNOT4O95628 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNOT4O95628 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.23■□□□□ 0.51
CNOT4O95628 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.23■□□□□ 0.51
CNOT4O95628 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CNOT4O95628 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CNOT4O95628 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.23■□□□□ 0.51
CNOT4O95628 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNOT4O95628 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CNOT4O95628 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CNOT4O95628 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CNOT4O95628 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.23■□□□□ 0.51
CNOT4O95628 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.22■□□□□ 0.51
CNOT4O95628 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CNOT4O95628 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CNOT4O95628 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CNOT4O95628 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CNOT4O95628 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CNOT4O95628 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CNOT4O95628 AC073210.2-201ENST00000430369 194 ntBASIC18.22■□□□□ 0.51
CNOT4O95628 GUSBP6-202ENST00000438529 1198 ntBASIC18.22■□□□□ 0.51
CNOT4O95628 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.22■□□□□ 0.51
CNOT4O95628 Z98882.1-201ENST00000622160 2253 ntBASIC18.22■□□□□ 0.51
CNOT4O95628 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
CNOT4O95628 MKRN4P-201ENST00000444706 1521 ntBASIC18.22■□□□□ 0.51
CNOT4O95628 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CNOT4O95628 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CNOT4O95628 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
CNOT4O95628 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.22■□□□□ 0.51
CNOT4O95628 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.22■□□□□ 0.51
CNOT4O95628 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
CNOT4O95628 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CNOT4O95628 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.21■□□□□ 0.51
CNOT4O95628 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CNOT4O95628 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.21■□□□□ 0.51
CNOT4O95628 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.21■□□□□ 0.51
CNOT4O95628 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.21■□□□□ 0.51
CNOT4O95628 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.21■□□□□ 0.51
CNOT4O95628 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.21■□□□□ 0.51
CNOT4O95628 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.21■□□□□ 0.51
CNOT4O95628 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.21■□□□□ 0.51
CNOT4O95628 AC016405.3-201ENST00000607710 860 ntBASIC18.21■□□□□ 0.51
CNOT4O95628 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.21■□□□□ 0.51
CNOT4O95628 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CNOT4O95628 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CNOT4O95628 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.21■□□□□ 0.51
CNOT4O95628 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CNOT4O95628 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CNOT4O95628 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CNOT4O95628 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
CNOT4O95628 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CNOT4O95628 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CNOT4O95628 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
CNOT4O95628 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
CNOT4O95628 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.2■□□□□ 0.5
CNOT4O95628 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CNOT4O95628 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CNOT4O95628 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CNOT4O95628 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CNOT4O95628 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.2■□□□□ 0.5
CNOT4O95628 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CNOT4O95628 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.2■□□□□ 0.5
CNOT4O95628 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms