Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.24■□□□□ 0.83
GFRA3O60609 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
GFRA3O60609 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
GFRA3O60609 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.24■□□□□ 0.83
GFRA3O60609 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
GFRA3O60609 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
GFRA3O60609 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
GFRA3O60609 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
GFRA3O60609 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.23■□□□□ 0.83
GFRA3O60609 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
GFRA3O60609 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.23■□□□□ 0.83
GFRA3O60609 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC20.23■□□□□ 0.83
GFRA3O60609 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.23■□□□□ 0.83
GFRA3O60609 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.23■□□□□ 0.83
GFRA3O60609 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
GFRA3O60609 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.23■□□□□ 0.83
GFRA3O60609 AC007322.3-201ENST00000426526 701 ntBASIC20.23■□□□□ 0.83
GFRA3O60609 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.23■□□□□ 0.83
GFRA3O60609 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.23■□□□□ 0.83
GFRA3O60609 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
GFRA3O60609 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
GFRA3O60609 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.23■□□□□ 0.83
GFRA3O60609 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
GFRA3O60609 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
GFRA3O60609 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
GFRA3O60609 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
GFRA3O60609 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
GFRA3O60609 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
GFRA3O60609 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
GFRA3O60609 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
GFRA3O60609 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
GFRA3O60609 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
GFRA3O60609 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
GFRA3O60609 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
GFRA3O60609 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
GFRA3O60609 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.22■□□□□ 0.83
GFRA3O60609 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
GFRA3O60609 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.22■□□□□ 0.83
GFRA3O60609 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.22■□□□□ 0.83
GFRA3O60609 AC023511.2-201ENST00000618803 211 ntBASIC20.22■□□□□ 0.83
GFRA3O60609 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.22■□□□□ 0.83
GFRA3O60609 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
GFRA3O60609 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
GFRA3O60609 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
GFRA3O60609 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.21■□□□□ 0.83
GFRA3O60609 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
GFRA3O60609 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
GFRA3O60609 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.21■□□□□ 0.83
GFRA3O60609 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.21■□□□□ 0.83
GFRA3O60609 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.21■□□□□ 0.83
GFRA3O60609 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
GFRA3O60609 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
GFRA3O60609 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.21■□□□□ 0.83
GFRA3O60609 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
GFRA3O60609 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
GFRA3O60609 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
GFRA3O60609 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
GFRA3O60609 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
GFRA3O60609 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
GFRA3O60609 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.2■□□□□ 0.82
GFRA3O60609 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
GFRA3O60609 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
GFRA3O60609 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
GFRA3O60609 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
GFRA3O60609 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.2■□□□□ 0.82
GFRA3O60609 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
GFRA3O60609 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.2■□□□□ 0.82
GFRA3O60609 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.2■□□□□ 0.82
GFRA3O60609 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
GFRA3O60609 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.2■□□□□ 0.82
GFRA3O60609 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC20.2■□□□□ 0.82
GFRA3O60609 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
GFRA3O60609 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
GFRA3O60609 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.2■□□□□ 0.82
GFRA3O60609 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
GFRA3O60609 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
GFRA3O60609 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.2■□□□□ 0.82
GFRA3O60609 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
GFRA3O60609 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.19■□□□□ 0.82
GFRA3O60609 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.19■□□□□ 0.82
GFRA3O60609 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
GFRA3O60609 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
GFRA3O60609 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
GFRA3O60609 FAM8A6P-201ENST00000407496 1135 ntBASIC20.19■□□□□ 0.82
GFRA3O60609 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
GFRA3O60609 AP002982.1-201ENST00000492365 877 ntBASIC20.19■□□□□ 0.82
GFRA3O60609 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.19■□□□□ 0.82
GFRA3O60609 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.19■□□□□ 0.82
GFRA3O60609 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
GFRA3O60609 KLK8-205ENST00000593490 267 ntTSL 3 BASIC20.19■□□□□ 0.82
GFRA3O60609 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.19■□□□□ 0.82
GFRA3O60609 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
GFRA3O60609 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
GFRA3O60609 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
GFRA3O60609 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
GFRA3O60609 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
GFRA3O60609 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
GFRA3O60609 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
GFRA3O60609 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.18■□□□□ 0.82
GFRA3O60609 PCED1CP-201ENST00000419887 785 ntBASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms