Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB3O15347 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB3O15347 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB3O15347 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB3O15347 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
HMGB3O15347 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB3O15347 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
HMGB3O15347 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
HMGB3O15347 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB3O15347 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
HMGB3O15347 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGB3O15347 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC16.55■□□□□ 0.24
HMGB3O15347 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC16.55■□□□□ 0.24
HMGB3O15347 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB3O15347 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
HMGB3O15347 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB3O15347 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGB3O15347 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
HMGB3O15347 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 AC004987.1-201ENST00000428627 508 ntBASIC16.54■□□□□ 0.24
HMGB3O15347 CLTA-206ENST00000466396 695 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGB3O15347 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HMGB3O15347 PARN-205ENST00000539279 1557 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGB3O15347 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC16.54■□□□□ 0.24
HMGB3O15347 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB3O15347 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HMGB3O15347 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB3O15347 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB3O15347 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HMGB3O15347 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HMGB3O15347 AC006128.1-201ENST00000624704 1661 ntBASIC16.53■□□□□ 0.24
HMGB3O15347 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGB3O15347 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB3O15347 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
HMGB3O15347 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB3O15347 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HMGB3O15347 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HMGB3O15347 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB3O15347 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HMGB3O15347 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB3O15347 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGB3O15347 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGB3O15347 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC16.53■□□□□ 0.24
HMGB3O15347 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB3O15347 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HMGB3O15347 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HMGB3O15347 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB3O15347 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HMGB3O15347 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HMGB3O15347 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB3O15347 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC16.53■□□□□ 0.24
HMGB3O15347 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB3O15347 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB3O15347 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
HMGB3O15347 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB3O15347 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB3O15347 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
HMGB3O15347 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB3O15347 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
HMGB3O15347 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB3O15347 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC16.52■□□□□ 0.24
HMGB3O15347 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB3O15347 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC16.52■□□□□ 0.24
HMGB3O15347 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
HMGB3O15347 ATP5G2P3-201ENST00000429083 425 ntBASIC16.52■□□□□ 0.24
HMGB3O15347 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB3O15347 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
HMGB3O15347 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
HMGB3O15347 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGB3O15347 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGB3O15347 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HMGB3O15347 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
HMGB3O15347 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGB3O15347 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HMGB3O15347 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC16.52■□□□□ 0.23
HMGB3O15347 USP45-205ENST00000472914 1617 ntTSL 5 BASIC16.52■□□□□ 0.23
HMGB3O15347 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
HMGB3O15347 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HMGB3O15347 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB3O15347 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HMGB3O15347 PLK5-205ENST00000642079 1969 ntBASIC16.51■□□□□ 0.23
HMGB3O15347 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
HMGB3O15347 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGB3O15347 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
HMGB3O15347 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms