Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SMIM28A0A1B0GU29 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 AC087633.2-202ENST00000565166 1439 ntBASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 AC105020.6-201ENST00000621523 1217 ntBASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 TMEM191A-211ENST00000637163 1067 ntBASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 AC079834.2-201ENST00000609776 1949 ntBASIC22.15■■□□□ 1.14
SMIM28A0A1B0GU29 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
SMIM28A0A1B0GU29 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
SMIM28A0A1B0GU29 FEM1AP4-201ENST00000443167 1987 ntBASIC22.14■■□□□ 1.14
SMIM28A0A1B0GU29 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
SMIM28A0A1B0GU29 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
SMIM28A0A1B0GU29 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SMIM28A0A1B0GU29 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
SMIM28A0A1B0GU29 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC22.14■■□□□ 1.13
SMIM28A0A1B0GU29 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
SMIM28A0A1B0GU29 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
SMIM28A0A1B0GU29 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC22.14■■□□□ 1.13
SMIM28A0A1B0GU29 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
SMIM28A0A1B0GU29 INO80E-214ENST00000620599 515 ntTSL 2 BASIC22.14■■□□□ 1.13
SMIM28A0A1B0GU29 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SMIM28A0A1B0GU29 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC22.14■■□□□ 1.13
SMIM28A0A1B0GU29 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC22.14■■□□□ 1.13
SMIM28A0A1B0GU29 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
SMIM28A0A1B0GU29 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
SMIM28A0A1B0GU29 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 FAM201B-201ENST00000458407 597 ntBASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 WWC2-AS2-201ENST00000578387 2183 ntBASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SMIM28A0A1B0GU29 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 NXN-202ENST00000537628 1340 ntTSL 3 BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 POU5F1P3-201ENST00000428824 1078 ntBASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SMIM28A0A1B0GU29 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
SMIM28A0A1B0GU29 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SMIM28A0A1B0GU29 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SMIM28A0A1B0GU29 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
SMIM28A0A1B0GU29 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC22.11■■□□□ 1.13
SMIM28A0A1B0GU29 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
SMIM28A0A1B0GU29 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SMIM28A0A1B0GU29 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SMIM28A0A1B0GU29 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SMIM28A0A1B0GU29 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC22.11■■□□□ 1.13
SMIM28A0A1B0GU29 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC22.11■■□□□ 1.13
SMIM28A0A1B0GU29 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms