Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 MYB-221ENST00000527615 2381 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAV40A0A0B4J280 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 KRT18P68-201ENST00000392293 1000 ntBASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 ESRRAP1-201ENST00000400596 1257 ntBASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 NME6-213ENST00000451657 871 ntTSL 2 BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC16.77■□□□□ 0.28
TRAV40A0A0B4J280 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV40A0A0B4J280 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV40A0A0B4J280 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
TRAV40A0A0B4J280 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV40A0A0B4J280 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV40A0A0B4J280 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV40A0A0B4J280 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC16.76■□□□□ 0.27
TRAV40A0A0B4J280 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 GATS-209ENST00000454084 1030 ntTSL 3 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 IRX5-204ENST00000560154 879 ntTSL 5 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 PALM-207ENST00000590161 2137 ntTSL 4 BASIC16.75■□□□□ 0.27
TRAV40A0A0B4J280 FBXW4P1-201ENST00000426721 2239 ntBASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 DYM-203ENST00000442713 2147 ntTSL 2 BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 HES2-205ENST00000487437 968 ntTSL 3 BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 AC105020.6-201ENST00000621523 1217 ntBASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms