Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC23.07■■□□□ 1.28
COL4A3BPQ9Y5P4 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL4A3BPQ9Y5P4 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
COL4A3BPQ9Y5P4 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
COL4A3BPQ9Y5P4 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC23.07■■□□□ 1.28
COL4A3BPQ9Y5P4 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL4A3BPQ9Y5P4 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
COL4A3BPQ9Y5P4 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC23.07■■□□□ 1.28
COL4A3BPQ9Y5P4 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
COL4A3BPQ9Y5P4 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC23.06■■□□□ 1.28
COL4A3BPQ9Y5P4 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC23.05■■□□□ 1.28
COL4A3BPQ9Y5P4 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL4A3BPQ9Y5P4 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL4A3BPQ9Y5P4 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL4A3BPQ9Y5P4 SLC29A4P1-201ENST00000398760 971 ntBASIC23.05■■□□□ 1.28
COL4A3BPQ9Y5P4 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
COL4A3BPQ9Y5P4 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
COL4A3BPQ9Y5P4 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL4A3BPQ9Y5P4 AL591742.1-201ENST00000604433 565 ntBASIC23.05■■□□□ 1.28
COL4A3BPQ9Y5P4 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL4A3BPQ9Y5P4 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL4A3BPQ9Y5P4 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 AC069236.1-201ENST00000604339 616 ntBASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 OR10C1-204ENST00000622521 1039 ntBASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 AC008694.1-202ENST00000636953 945 ntBASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
COL4A3BPQ9Y5P4 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
COL4A3BPQ9Y5P4 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC23.03■■□□□ 1.28
COL4A3BPQ9Y5P4 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC23.03■■□□□ 1.28
COL4A3BPQ9Y5P4 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC23.03■■□□□ 1.28
COL4A3BPQ9Y5P4 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
COL4A3BPQ9Y5P4 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC23.03■■□□□ 1.28
COL4A3BPQ9Y5P4 AL162412.1-201ENST00000567129 965 ntBASIC23.03■■□□□ 1.28
COL4A3BPQ9Y5P4 AC142086.2-201ENST00000569753 217 ntBASIC23.03■■□□□ 1.28
COL4A3BPQ9Y5P4 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
COL4A3BPQ9Y5P4 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC23.03■■□□□ 1.28
COL4A3BPQ9Y5P4 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL4A3BPQ9Y5P4 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
COL4A3BPQ9Y5P4 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC23.02■■□□□ 1.28
COL4A3BPQ9Y5P4 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A3BPQ9Y5P4 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A3BPQ9Y5P4 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A3BPQ9Y5P4 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
COL4A3BPQ9Y5P4 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
COL4A3BPQ9Y5P4 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC23.02■■□□□ 1.28
COL4A3BPQ9Y5P4 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC23.02■■□□□ 1.28
COL4A3BPQ9Y5P4 AC016405.3-201ENST00000607710 860 ntBASIC23.02■■□□□ 1.28
COL4A3BPQ9Y5P4 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A3BPQ9Y5P4 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A3BPQ9Y5P4 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A3BPQ9Y5P4 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL4A3BPQ9Y5P4 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A3BPQ9Y5P4 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A3BPQ9Y5P4 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A3BPQ9Y5P4 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC23.01■■□□□ 1.27
COL4A3BPQ9Y5P4 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A3BPQ9Y5P4 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A3BPQ9Y5P4 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
COL4A3BPQ9Y5P4 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A3BPQ9Y5P4 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.01■■□□□ 1.27
COL4A3BPQ9Y5P4 AL138781.1-201ENST00000566567 1274 ntBASIC23.01■■□□□ 1.27
COL4A3BPQ9Y5P4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC23.01■■□□□ 1.27
COL4A3BPQ9Y5P4 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
COL4A3BPQ9Y5P4 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.01■■□□□ 1.27
COL4A3BPQ9Y5P4 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC23.01■■□□□ 1.27
COL4A3BPQ9Y5P4 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC23.01■■□□□ 1.27
COL4A3BPQ9Y5P4 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC23■■□□□ 1.27
COL4A3BPQ9Y5P4 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL4A3BPQ9Y5P4 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
COL4A3BPQ9Y5P4 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
COL4A3BPQ9Y5P4 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL4A3BPQ9Y5P4 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
COL4A3BPQ9Y5P4 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms