Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 C2orf69P4-201ENST00000565394 541 ntBASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 C11orf96-202ENST00000528572 1834 ntBASIC19.88■□□□□ 0.77
PCDHGA1Q9Y5H4 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 MIR4785-201ENST00000585005 73 ntBASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 AC124016.1-201ENST00000609552 612 ntBASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCDHGA1Q9Y5H4 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 AL049637.2-201ENST00000641778 930 ntBASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 NFE2L3P1-201ENST00000588207 1959 ntBASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.86■□□□□ 0.77
PCDHGA1Q9Y5H4 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.85■□□□□ 0.77
PCDHGA1Q9Y5H4 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 AC239809.2-201ENST00000415381 517 ntBASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 TSPY7P-201ENST00000431358 1114 ntBASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 AC110285.5-201ENST00000611501 352 ntBASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
PCDHGA1Q9Y5H4 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms