Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 DUX4L2-201ENST00000561772 1275 ntBASIC16.66■□□□□ 0.26
FOXA2Q9Y261 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 DUX4L6-201ENST00000626483 1275 ntBASIC16.66■□□□□ 0.26
FOXA2Q9Y261 DUX4L1-201ENST00000627662 1275 ntBASIC16.66■□□□□ 0.26
FOXA2Q9Y261 DUX4L8-201ENST00000629013 1275 ntBASIC16.66■□□□□ 0.26
FOXA2Q9Y261 DUX4L3-201ENST00000630187 1275 ntBASIC16.66■□□□□ 0.26
FOXA2Q9Y261 DUX4L7-201ENST00000630678 1275 ntBASIC16.66■□□□□ 0.26
FOXA2Q9Y261 DUX4L5-201ENST00000630834 1275 ntBASIC16.66■□□□□ 0.26
FOXA2Q9Y261 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 COX20-201ENST00000366528 568 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 EEF1DP3-203ENST00000566025 782 ntBASIC16.65■□□□□ 0.26
FOXA2Q9Y261 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 AC053503.5-201ENST00000601508 636 ntBASIC16.65■□□□□ 0.26
FOXA2Q9Y261 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.65■□□□□ 0.26
FOXA2Q9Y261 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 AC027702.1-201ENST00000563810 1770 ntBASIC16.64■□□□□ 0.25
FOXA2Q9Y261 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA2Q9Y261 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 HACD1-201ENST00000326961 773 ntTSL 2 BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 ANKRD20A6P-201ENST00000618763 204 ntBASIC16.63■□□□□ 0.25
FOXA2Q9Y261 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.63■□□□□ 0.25
FOXA2Q9Y261 AC020907.5-201ENST00000624372 1936 ntBASIC16.62■□□□□ 0.25
FOXA2Q9Y261 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 AP004607.4-201ENST00000530158 1459 ntBASIC16.62■□□□□ 0.25
FOXA2Q9Y261 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA2Q9Y261 ADM-207ENST00000530439 1839 ntTSL 2 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms