Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 CYP2T3P-201ENST00000601990 817 ntBASIC20.72■□□□□ 0.91
DKK3Q9UBP4 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.72■□□□□ 0.91
DKK3Q9UBP4 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
DKK3Q9UBP4 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
DKK3Q9UBP4 LINC00565-201ENST00000562710 2331 ntBASIC20.71■□□□□ 0.91
DKK3Q9UBP4 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
DKK3Q9UBP4 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
DKK3Q9UBP4 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.71■□□□□ 0.91
DKK3Q9UBP4 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.71■□□□□ 0.91
DKK3Q9UBP4 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.71■□□□□ 0.91
DKK3Q9UBP4 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.71■□□□□ 0.91
DKK3Q9UBP4 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.71■□□□□ 0.91
DKK3Q9UBP4 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
DKK3Q9UBP4 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
DKK3Q9UBP4 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
DKK3Q9UBP4 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
DKK3Q9UBP4 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.7■□□□□ 0.9
DKK3Q9UBP4 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.7■□□□□ 0.9
DKK3Q9UBP4 AL049796.1-201ENST00000565336 1766 ntBASIC20.69■□□□□ 0.9
DKK3Q9UBP4 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 AC098934.4-201ENST00000564127 592 ntBASIC20.69■□□□□ 0.9
DKK3Q9UBP4 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 CYP21A1P-202ENST00000354927 1481 ntBASIC20.69■□□□□ 0.9
DKK3Q9UBP4 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
DKK3Q9UBP4 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 AC011484.1-201ENST00000377652 1995 ntBASIC20.68■□□□□ 0.9
DKK3Q9UBP4 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms