Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
CLCF1Q9UBD9 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 KRT18P68-201ENST00000392293 1000 ntBASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 FBXW4P1-201ENST00000426721 2239 ntBASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 PKD1P6-201ENST00000343738 4769 ntBASIC18.36■□□□□ 0.53
CLCF1Q9UBD9 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.35■□□□□ 0.53
CLCF1Q9UBD9 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 Z98882.1-201ENST00000622160 2253 ntBASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLCF1Q9UBD9 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLCF1Q9UBD9 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.33■□□□□ 0.53
CLCF1Q9UBD9 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLCF1Q9UBD9 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.33■□□□□ 0.53
CLCF1Q9UBD9 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLCF1Q9UBD9 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.53
CLCF1Q9UBD9 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLCF1Q9UBD9 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLCF1Q9UBD9 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLCF1Q9UBD9 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLCF1Q9UBD9 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.33■□□□□ 0.52
CLCF1Q9UBD9 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLCF1Q9UBD9 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CLCF1Q9UBD9 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.33■□□□□ 0.52
CLCF1Q9UBD9 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLCF1Q9UBD9 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.33■□□□□ 0.52
CLCF1Q9UBD9 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC18.33■□□□□ 0.52
CLCF1Q9UBD9 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLCF1Q9UBD9 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 AC105020.6-201ENST00000621523 1217 ntBASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms