Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC24.29■■□□□ 1.48
BRF1Q92994 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC24.29■■□□□ 1.48
BRF1Q92994 AC243732.1-201ENST00000612648 864 ntBASIC24.29■■□□□ 1.48
BRF1Q92994 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC24.29■■□□□ 1.48
BRF1Q92994 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
BRF1Q92994 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
BRF1Q92994 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC24.29■■□□□ 1.48
BRF1Q92994 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
BRF1Q92994 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
BRF1Q92994 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC24.28■■□□□ 1.48
BRF1Q92994 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
BRF1Q92994 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC24.28■■□□□ 1.48
BRF1Q92994 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
BRF1Q92994 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
BRF1Q92994 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
BRF1Q92994 AC091799.1-201ENST00000422823 811 ntBASIC24.28■■□□□ 1.48
BRF1Q92994 AC137761.2-201ENST00000561729 223 ntBASIC24.28■■□□□ 1.48
BRF1Q92994 AC145350.3-201ENST00000569033 163 ntBASIC24.28■■□□□ 1.48
BRF1Q92994 MIR5787-201ENST00000611784 55 ntBASIC24.28■■□□□ 1.48
BRF1Q92994 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
BRF1Q92994 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
BRF1Q92994 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC24.28■■□□□ 1.48
BRF1Q92994 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
BRF1Q92994 AC007225.1-201ENST00000566331 1836 ntBASIC24.27■■□□□ 1.48
BRF1Q92994 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC24.27■■□□□ 1.48
BRF1Q92994 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
BRF1Q92994 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
BRF1Q92994 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
BRF1Q92994 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
BRF1Q92994 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
BRF1Q92994 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
BRF1Q92994 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
BRF1Q92994 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
BRF1Q92994 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC24.26■■□□□ 1.47
BRF1Q92994 FP700111.2-201ENST00000619190 1892 ntBASIC24.26■■□□□ 1.47
BRF1Q92994 LINC01006-201ENST00000333319 2292 ntBASIC24.26■■□□□ 1.47
BRF1Q92994 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
BRF1Q92994 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
BRF1Q92994 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC24.26■■□□□ 1.47
BRF1Q92994 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
BRF1Q92994 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC24.26■■□□□ 1.47
BRF1Q92994 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC24.26■■□□□ 1.47
BRF1Q92994 SPI1-203ENST00000533030 661 ntTSL 2 BASIC24.26■■□□□ 1.47
BRF1Q92994 BRI3-207ENST00000539286 699 ntTSL 2 BASIC24.26■■□□□ 1.47
BRF1Q92994 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC24.26■■□□□ 1.47
BRF1Q92994 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC24.26■■□□□ 1.47
BRF1Q92994 AC116050.2-201ENST00000612102 1779 ntBASIC24.26■■□□□ 1.47
BRF1Q92994 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
BRF1Q92994 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC24.26■■□□□ 1.47
BRF1Q92994 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
BRF1Q92994 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC24.25■■□□□ 1.47
BRF1Q92994 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
BRF1Q92994 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
BRF1Q92994 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
BRF1Q92994 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
BRF1Q92994 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC24.25■■□□□ 1.47
BRF1Q92994 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
BRF1Q92994 AC073130.3-201ENST00000624389 2278 ntBASIC24.25■■□□□ 1.47
BRF1Q92994 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC24.25■■□□□ 1.47
BRF1Q92994 UQCRFS1P1-201ENST00000435169 820 ntBASIC24.25■■□□□ 1.47
BRF1Q92994 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
BRF1Q92994 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
BRF1Q92994 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
BRF1Q92994 STAC-204ENST00000457375 1366 ntTSL 2 BASIC24.25■■□□□ 1.47
BRF1Q92994 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
BRF1Q92994 AC073314.1-201ENST00000568729 2216 ntBASIC24.25■■□□□ 1.47
BRF1Q92994 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
BRF1Q92994 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC24.24■■□□□ 1.47
BRF1Q92994 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC24.24■■□□□ 1.47
BRF1Q92994 AC092667.1-201ENST00000434301 2586 ntBASIC24.24■■□□□ 1.47
BRF1Q92994 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
BRF1Q92994 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
BRF1Q92994 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
BRF1Q92994 HSCB-202ENST00000398941 955 ntTSL 2 BASIC24.24■■□□□ 1.47
BRF1Q92994 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
BRF1Q92994 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
BRF1Q92994 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
BRF1Q92994 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC24.24■■□□□ 1.47
BRF1Q92994 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC24.24■■□□□ 1.47
BRF1Q92994 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
BRF1Q92994 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
BRF1Q92994 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
BRF1Q92994 BID-203ENST00000399765 1879 ntTSL 2 BASIC24.24■■□□□ 1.47
BRF1Q92994 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
BRF1Q92994 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
BRF1Q92994 MIR935-201ENST00000401179 91 ntBASIC24.23■■□□□ 1.47
BRF1Q92994 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
BRF1Q92994 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC24.23■■□□□ 1.47
BRF1Q92994 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
BRF1Q92994 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
BRF1Q92994 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
BRF1Q92994 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
BRF1Q92994 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
BRF1Q92994 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
BRF1Q92994 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC24.23■■□□□ 1.47
BRF1Q92994 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
BRF1Q92994 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC24.22■■□□□ 1.47
BRF1Q92994 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
BRF1Q92994 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
BRF1Q92994 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC24.22■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms