Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 ME2-206ENST00000638410 2289 ntTSL 5 BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 ME2-210ENST00000639255 2262 ntTSL 5 BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CCDC28AQ8IWP9 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 ABHD17AP5-201ENST00000580133 923 ntBASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 MIR6765-201ENST00000614092 87 ntBASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 AC112907.3-201ENST00000577781 2400 ntBASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28AQ8IWP9 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 OXCT2P1-201ENST00000447263 1535 ntBASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC28AQ8IWP9 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 HYI-210ENST00000486909 905 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 AC079598.2-202ENST00000546624 1451 ntBASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 AC012313.1-201ENST00000593393 3059 ntBASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
CCDC28AQ8IWP9 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.34
CCDC28AQ8IWP9 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
CCDC28AQ8IWP9 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms