Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 AC026471.5-201ENST00000615068 467 ntBASIC14.47□□□□□ -0.09
CSMD3Q7Z407 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 GGT1-206ENST00000404223 952 ntTSL 2 BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 PRKY-204ENST00000533551 1019 ntBASIC14.47□□□□□ -0.09
CSMD3Q7Z407 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC14.47□□□□□ -0.09
CSMD3Q7Z407 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 AC073508.3-201ENST00000619697 1419 ntBASIC14.47□□□□□ -0.09
CSMD3Q7Z407 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CSMD3Q7Z407 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CSMD3Q7Z407 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CSMD3Q7Z407 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CSMD3Q7Z407 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CSMD3Q7Z407 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CSMD3Q7Z407 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CSMD3Q7Z407 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CSMD3Q7Z407 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC14.46□□□□□ -0.1
CSMD3Q7Z407 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CSMD3Q7Z407 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC14.46□□□□□ -0.1
CSMD3Q7Z407 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CSMD3Q7Z407 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CSMD3Q7Z407 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 KRT8P9-201ENST00000558927 1449 ntBASIC14.45□□□□□ -0.1
CSMD3Q7Z407 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 AC120498.8-201ENST00000614275 531 ntBASIC14.45□□□□□ -0.1
CSMD3Q7Z407 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CSMD3Q7Z407 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CSMD3Q7Z407 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC14.44□□□□□ -0.1
CSMD3Q7Z407 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CSMD3Q7Z407 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC14.44□□□□□ -0.1
CSMD3Q7Z407 CFL2-205ENST00000555765 632 ntTSL 2 BASIC14.44□□□□□ -0.1
CSMD3Q7Z407 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC14.44□□□□□ -0.1
CSMD3Q7Z407 AC087633.2-202ENST00000565166 1439 ntBASIC14.44□□□□□ -0.1
CSMD3Q7Z407 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC14.44□□□□□ -0.1
CSMD3Q7Z407 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CSMD3Q7Z407 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CSMD3Q7Z407 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CSMD3Q7Z407 NXN-202ENST00000537628 1340 ntTSL 3 BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms