Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VSX2P58304 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.74■□□□□ 0.75
VSX2P58304 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.74■□□□□ 0.75
VSX2P58304 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VSX2P58304 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VSX2P58304 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VSX2P58304 AL355802.2-201ENST00000402069 882 ntBASIC19.74■□□□□ 0.75
VSX2P58304 AC007322.3-201ENST00000426526 701 ntBASIC19.74■□□□□ 0.75
VSX2P58304 TSPY6P-201ENST00000448518 926 ntBASIC19.74■□□□□ 0.75
VSX2P58304 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.74■□□□□ 0.75
VSX2P58304 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.74■□□□□ 0.75
VSX2P58304 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.74■□□□□ 0.75
VSX2P58304 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
VSX2P58304 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VSX2P58304 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.74■□□□□ 0.75
VSX2P58304 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VSX2P58304 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VSX2P58304 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VSX2P58304 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VSX2P58304 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VSX2P58304 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VSX2P58304 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VSX2P58304 MKRN4P-201ENST00000444706 1521 ntBASIC19.73■□□□□ 0.75
VSX2P58304 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VSX2P58304 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
VSX2P58304 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VSX2P58304 GUSBP6-202ENST00000438529 1198 ntBASIC19.73■□□□□ 0.75
VSX2P58304 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
VSX2P58304 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.73■□□□□ 0.75
VSX2P58304 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.73■□□□□ 0.75
VSX2P58304 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
VSX2P58304 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VSX2P58304 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VSX2P58304 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VSX2P58304 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.73■□□□□ 0.75
VSX2P58304 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VSX2P58304 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
VSX2P58304 AC116050.2-201ENST00000612102 1779 ntBASIC19.72■□□□□ 0.75
VSX2P58304 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.72■□□□□ 0.75
VSX2P58304 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
VSX2P58304 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
VSX2P58304 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
VSX2P58304 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VSX2P58304 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
VSX2P58304 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
VSX2P58304 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
VSX2P58304 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.72■□□□□ 0.75
VSX2P58304 FAM21FP-204ENST00000608637 956 ntBASIC19.72■□□□□ 0.75
VSX2P58304 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.72■□□□□ 0.75
VSX2P58304 FEM1AP4-201ENST00000443167 1987 ntBASIC19.72■□□□□ 0.75
VSX2P58304 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VSX2P58304 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
VSX2P58304 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.71■□□□□ 0.75
VSX2P58304 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VSX2P58304 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VSX2P58304 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.71■□□□□ 0.75
VSX2P58304 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VSX2P58304 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VSX2P58304 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.71■□□□□ 0.75
VSX2P58304 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VSX2P58304 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.71■□□□□ 0.75
VSX2P58304 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.71■□□□□ 0.75
VSX2P58304 AL512625.2-201ENST00000417533 625 ntBASIC19.71■□□□□ 0.75
VSX2P58304 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.71■□□□□ 0.75
VSX2P58304 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.71■□□□□ 0.75
VSX2P58304 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
VSX2P58304 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VSX2P58304 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VSX2P58304 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VSX2P58304 AF106564.1-201ENST00000607058 2553 ntBASIC19.7■□□□□ 0.74
VSX2P58304 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VSX2P58304 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
VSX2P58304 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VSX2P58304 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VSX2P58304 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
VSX2P58304 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.7■□□□□ 0.74
VSX2P58304 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.7■□□□□ 0.74
VSX2P58304 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VSX2P58304 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.7■□□□□ 0.74
VSX2P58304 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VSX2P58304 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.7■□□□□ 0.74
VSX2P58304 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VSX2P58304 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VSX2P58304 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.69■□□□□ 0.74
VSX2P58304 AC010980.2-201ENST00000587099 1412 ntBASIC19.69■□□□□ 0.74
VSX2P58304 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VSX2P58304 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.69■□□□□ 0.74
VSX2P58304 AC026310.3-201ENST00000625186 2373 ntBASIC19.69■□□□□ 0.74
VSX2P58304 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
VSX2P58304 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VSX2P58304 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.69■□□□□ 0.74
VSX2P58304 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.69■□□□□ 0.74
VSX2P58304 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.69■□□□□ 0.74
VSX2P58304 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VSX2P58304 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VSX2P58304 AL049796.1-201ENST00000565336 1766 ntBASIC19.69■□□□□ 0.74
VSX2P58304 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VSX2P58304 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VSX2P58304 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VSX2P58304 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms