Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.23■□□□□ 0.99
NEK3P51956 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.23■□□□□ 0.99
NEK3P51956 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
NEK3P51956 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
NEK3P51956 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NEK3P51956 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NEK3P51956 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NEK3P51956 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
NEK3P51956 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.23■□□□□ 0.99
NEK3P51956 LINC01006-201ENST00000333319 2292 ntBASIC21.22■□□□□ 0.99
NEK3P51956 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
NEK3P51956 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.22■□□□□ 0.99
NEK3P51956 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.22■□□□□ 0.99
NEK3P51956 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NEK3P51956 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.22■□□□□ 0.99
NEK3P51956 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.22■□□□□ 0.99
NEK3P51956 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
NEK3P51956 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
NEK3P51956 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.22■□□□□ 0.99
NEK3P51956 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
NEK3P51956 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NEK3P51956 SLC7A5P2-201ENST00000553010 536 ntBASIC21.22■□□□□ 0.99
NEK3P51956 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.22■□□□□ 0.99
NEK3P51956 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.22■□□□□ 0.99
NEK3P51956 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.22■□□□□ 0.99
NEK3P51956 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.22■□□□□ 0.99
NEK3P51956 AC010536.3-201ENST00000620306 533 ntBASIC21.22■□□□□ 0.99
NEK3P51956 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.22■□□□□ 0.99
NEK3P51956 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NEK3P51956 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.22■□□□□ 0.99
NEK3P51956 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NEK3P51956 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
NEK3P51956 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NEK3P51956 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NEK3P51956 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NEK3P51956 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NEK3P51956 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.21■□□□□ 0.99
NEK3P51956 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
NEK3P51956 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NEK3P51956 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NEK3P51956 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NEK3P51956 HLA-L-209ENST00000420110 1011 ntBASIC21.21■□□□□ 0.99
NEK3P51956 AC007322.1-201ENST00000426983 750 ntBASIC21.21■□□□□ 0.99
NEK3P51956 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.21■□□□□ 0.99
NEK3P51956 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.21■□□□□ 0.99
NEK3P51956 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.21■□□□□ 0.99
NEK3P51956 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.21■□□□□ 0.99
NEK3P51956 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
NEK3P51956 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NEK3P51956 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
NEK3P51956 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NEK3P51956 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.21■□□□□ 0.99
NEK3P51956 AL049796.1-201ENST00000565336 1766 ntBASIC21.2■□□□□ 0.99
NEK3P51956 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
NEK3P51956 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.2■□□□□ 0.98
NEK3P51956 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
NEK3P51956 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.2■□□□□ 0.98
NEK3P51956 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
NEK3P51956 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NEK3P51956 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.2■□□□□ 0.98
NEK3P51956 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NEK3P51956 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
NEK3P51956 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
NEK3P51956 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NEK3P51956 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.2■□□□□ 0.98
NEK3P51956 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NEK3P51956 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NEK3P51956 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.2■□□□□ 0.98
NEK3P51956 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.19■□□□□ 0.98
NEK3P51956 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.19■□□□□ 0.98
NEK3P51956 FEM1AP1-201ENST00000431297 1995 ntBASIC21.19■□□□□ 0.98
NEK3P51956 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NEK3P51956 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NEK3P51956 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NEK3P51956 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.19■□□□□ 0.98
NEK3P51956 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.19■□□□□ 0.98
NEK3P51956 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NEK3P51956 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.19■□□□□ 0.98
NEK3P51956 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NEK3P51956 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NEK3P51956 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
NEK3P51956 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
NEK3P51956 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NEK3P51956 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.18■□□□□ 0.98
NEK3P51956 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NEK3P51956 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NEK3P51956 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NEK3P51956 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
NEK3P51956 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NEK3P51956 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
NEK3P51956 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NEK3P51956 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NEK3P51956 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
NEK3P51956 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NEK3P51956 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NEK3P51956 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NEK3P51956 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
NEK3P51956 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NEK3P51956 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NEK3P51956 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms