Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SDC1P18827 AC120498.10-201ENST00000621827 505 ntBASIC19.65■□□□□ 0.74
SDC1P18827 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SDC1P18827 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.65■□□□□ 0.74
SDC1P18827 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.65■□□□□ 0.74
SDC1P18827 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SDC1P18827 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
SDC1P18827 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SDC1P18827 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.65■□□□□ 0.74
SDC1P18827 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SDC1P18827 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.64■□□□□ 0.74
SDC1P18827 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.74
SDC1P18827 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SDC1P18827 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SDC1P18827 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SDC1P18827 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.64■□□□□ 0.73
SDC1P18827 YBX1P1-201ENST00000445822 960 ntBASIC19.64■□□□□ 0.73
SDC1P18827 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.64■□□□□ 0.73
SDC1P18827 SLC7A5P2-201ENST00000553010 536 ntBASIC19.64■□□□□ 0.73
SDC1P18827 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.64■□□□□ 0.73
SDC1P18827 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.64■□□□□ 0.73
SDC1P18827 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SDC1P18827 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
SDC1P18827 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SDC1P18827 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
SDC1P18827 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SDC1P18827 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SDC1P18827 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SDC1P18827 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.64■□□□□ 0.73
SDC1P18827 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SDC1P18827 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SDC1P18827 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC1P18827 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SDC1P18827 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC1P18827 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.63■□□□□ 0.73
SDC1P18827 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC1P18827 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC1P18827 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SDC1P18827 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.63■□□□□ 0.73
SDC1P18827 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.63■□□□□ 0.73
SDC1P18827 AP001160.3-201ENST00000601484 763 ntBASIC19.63■□□□□ 0.73
SDC1P18827 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SDC1P18827 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDC1P18827 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.63■□□□□ 0.73
SDC1P18827 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SDC1P18827 AL121603.2-201ENST00000557373 2117 ntBASIC19.63■□□□□ 0.73
SDC1P18827 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SDC1P18827 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.62■□□□□ 0.73
SDC1P18827 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDC1P18827 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.62■□□□□ 0.73
SDC1P18827 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
SDC1P18827 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.62■□□□□ 0.73
SDC1P18827 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
SDC1P18827 AL391422.3-201ENST00000603791 2761 ntBASIC19.62■□□□□ 0.73
SDC1P18827 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDC1P18827 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.62■□□□□ 0.73
SDC1P18827 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDC1P18827 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SDC1P18827 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDC1P18827 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDC1P18827 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDC1P18827 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDC1P18827 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.62■□□□□ 0.73
SDC1P18827 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.62■□□□□ 0.73
SDC1P18827 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.62■□□□□ 0.73
SDC1P18827 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.62■□□□□ 0.73
SDC1P18827 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.62■□□□□ 0.73
SDC1P18827 CCDC92B-201ENST00000575506 885 ntBASIC19.62■□□□□ 0.73
SDC1P18827 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.62■□□□□ 0.73
SDC1P18827 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDC1P18827 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SDC1P18827 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDC1P18827 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDC1P18827 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.62■□□□□ 0.73
SDC1P18827 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.62■□□□□ 0.73
SDC1P18827 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDC1P18827 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SDC1P18827 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SDC1P18827 AL512408.1-201ENST00000569378 2000 ntBASIC19.61■□□□□ 0.73
SDC1P18827 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
SDC1P18827 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SDC1P18827 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SDC1P18827 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SDC1P18827 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SDC1P18827 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.61■□□□□ 0.73
SDC1P18827 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.61■□□□□ 0.73
SDC1P18827 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.61■□□□□ 0.73
SDC1P18827 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.61■□□□□ 0.73
SDC1P18827 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SDC1P18827 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SDC1P18827 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SDC1P18827 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.61■□□□□ 0.73
SDC1P18827 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SDC1P18827 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SDC1P18827 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC1P18827 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC1P18827 AL162377.1-201ENST00000618844 1793 ntBASIC19.6■□□□□ 0.73
SDC1P18827 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC1P18827 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDC1P18827 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms