Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.52■■□□□ 1.04
HMGA1P17096 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGA1P17096 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.52■■□□□ 1.04
HMGA1P17096 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
HMGA1P17096 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HMGA1P17096 AP003097.1-201ENST00000530657 1135 ntBASIC21.52■■□□□ 1.04
HMGA1P17096 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.52■■□□□ 1.04
HMGA1P17096 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
HMGA1P17096 AC008403.3-201ENST00000598924 454 ntBASIC21.52■■□□□ 1.04
HMGA1P17096 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
HMGA1P17096 AC087633.2-202ENST00000565166 1439 ntBASIC21.52■■□□□ 1.04
HMGA1P17096 FBXW4P1-201ENST00000426721 2239 ntBASIC21.52■■□□□ 1.04
HMGA1P17096 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
HMGA1P17096 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
HMGA1P17096 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
HMGA1P17096 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
HMGA1P17096 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.51■■□□□ 1.03
HMGA1P17096 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGA1P17096 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.51■■□□□ 1.03
HMGA1P17096 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.51■■□□□ 1.03
HMGA1P17096 AC098590.1-201ENST00000468126 897 ntBASIC21.51■■□□□ 1.03
HMGA1P17096 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HMGA1P17096 AC006058.3-201ENST00000606217 1069 ntBASIC21.51■■□□□ 1.03
HMGA1P17096 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.51■■□□□ 1.03
HMGA1P17096 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGA1P17096 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGA1P17096 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGA1P17096 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HMGA1P17096 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGA1P17096 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HMGA1P17096 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.51■■□□□ 1.03
HMGA1P17096 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HMGA1P17096 Z98882.1-201ENST00000622160 2253 ntBASIC21.5■■□□□ 1.03
HMGA1P17096 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.5■■□□□ 1.03
HMGA1P17096 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.5■■□□□ 1.03
HMGA1P17096 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HMGA1P17096 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HMGA1P17096 AC128676.1-201ENST00000454392 318 ntBASIC21.5■■□□□ 1.03
HMGA1P17096 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HMGA1P17096 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.5■■□□□ 1.03
HMGA1P17096 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HMGA1P17096 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGA1P17096 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HMGA1P17096 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.49■■□□□ 1.03
HMGA1P17096 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGA1P17096 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGA1P17096 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
HMGA1P17096 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.49■■□□□ 1.03
HMGA1P17096 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGA1P17096 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HMGA1P17096 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGA1P17096 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC21.49■■□□□ 1.03
HMGA1P17096 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.49■■□□□ 1.03
HMGA1P17096 PNMA6B-201ENST00000538162 1200 ntBASIC21.49■■□□□ 1.03
HMGA1P17096 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
HMGA1P17096 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.49■■□□□ 1.03
HMGA1P17096 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGA1P17096 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.49■■□□□ 1.03
HMGA1P17096 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
HMGA1P17096 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HMGA1P17096 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGA1P17096 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HMGA1P17096 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGA1P17096 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HMGA1P17096 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.48■■□□□ 1.03
HMGA1P17096 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HMGA1P17096 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HMGA1P17096 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.48■■□□□ 1.03
HMGA1P17096 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGA1P17096 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGA1P17096 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
HMGA1P17096 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGA1P17096 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGA1P17096 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGA1P17096 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGA1P17096 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HMGA1P17096 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGA1P17096 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGA1P17096 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
HMGA1P17096 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGA1P17096 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGA1P17096 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.48■■□□□ 1.03
HMGA1P17096 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
HMGA1P17096 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
HMGA1P17096 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.47■■□□□ 1.03
HMGA1P17096 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HMGA1P17096 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
HMGA1P17096 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HMGA1P17096 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
HMGA1P17096 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.47■■□□□ 1.03
HMGA1P17096 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HMGA1P17096 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.47■■□□□ 1.03
HMGA1P17096 C2orf69P4-201ENST00000565394 541 ntBASIC21.47■■□□□ 1.03
HMGA1P17096 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HMGA1P17096 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
HMGA1P17096 AC092368.3-202ENST00000574180 1591 ntBASIC21.47■■□□□ 1.03
HMGA1P17096 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HMGA1P17096 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGA1P17096 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGA1P17096 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms