Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
HMGB1P09429 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
HMGB1P09429 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
HMGB1P09429 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
HMGB1P09429 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC24.34■■□□□ 1.49
HMGB1P09429 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
HMGB1P09429 SAPCD2P1-201ENST00000395413 1184 ntBASIC24.34■■□□□ 1.49
HMGB1P09429 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
HMGB1P09429 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
HMGB1P09429 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC24.34■■□□□ 1.49
HMGB1P09429 TERF1P5-201ENST00000477545 1207 ntBASIC24.34■■□□□ 1.49
HMGB1P09429 BRI3-207ENST00000539286 699 ntTSL 2 BASIC24.34■■□□□ 1.49
HMGB1P09429 ANKRD20A6P-201ENST00000618763 204 ntBASIC24.34■■□□□ 1.49
HMGB1P09429 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
HMGB1P09429 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
HMGB1P09429 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
HMGB1P09429 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC24.34■■□□□ 1.49
HMGB1P09429 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
HMGB1P09429 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
HMGB1P09429 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
HMGB1P09429 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
HMGB1P09429 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
HMGB1P09429 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
HMGB1P09429 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
HMGB1P09429 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
HMGB1P09429 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
HMGB1P09429 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
HMGB1P09429 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
HMGB1P09429 AC007322.3-201ENST00000426526 701 ntBASIC24.33■■□□□ 1.49
HMGB1P09429 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC24.33■■□□□ 1.49
HMGB1P09429 SPI1-203ENST00000533030 661 ntTSL 2 BASIC24.33■■□□□ 1.49
HMGB1P09429 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC24.33■■□□□ 1.49
HMGB1P09429 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
HMGB1P09429 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
HMGB1P09429 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
HMGB1P09429 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
HMGB1P09429 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
HMGB1P09429 BID-203ENST00000399765 1879 ntTSL 2 BASIC24.32■■□□□ 1.48
HMGB1P09429 FP700111.2-201ENST00000619190 1892 ntBASIC24.32■■□□□ 1.48
HMGB1P09429 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC24.32■■□□□ 1.48
HMGB1P09429 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
HMGB1P09429 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
HMGB1P09429 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
HMGB1P09429 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
HMGB1P09429 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC24.32■■□□□ 1.48
HMGB1P09429 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC24.32■■□□□ 1.48
HMGB1P09429 CDV3P1-201ENST00000471403 739 ntBASIC24.32■■□□□ 1.48
HMGB1P09429 AL162430.1-201ENST00000480705 870 ntBASIC24.32■■□□□ 1.48
HMGB1P09429 WWOX-218ENST00000627394 894 ntTSL 5 BASIC24.32■■□□□ 1.48
HMGB1P09429 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC24.32■■□□□ 1.48
HMGB1P09429 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC24.32■■□□□ 1.48
HMGB1P09429 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
HMGB1P09429 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
HMGB1P09429 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC24.32■■□□□ 1.48
HMGB1P09429 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
HMGB1P09429 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
HMGB1P09429 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
HMGB1P09429 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC24.31■■□□□ 1.48
HMGB1P09429 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC24.31■■□□□ 1.48
HMGB1P09429 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
HMGB1P09429 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC24.31■■□□□ 1.48
HMGB1P09429 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
HMGB1P09429 AC016769.1-201ENST00000409132 1010 ntBASIC24.31■■□□□ 1.48
HMGB1P09429 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
HMGB1P09429 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
HMGB1P09429 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
HMGB1P09429 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC24.31■■□□□ 1.48
HMGB1P09429 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
HMGB1P09429 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
HMGB1P09429 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
HMGB1P09429 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
HMGB1P09429 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
HMGB1P09429 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
HMGB1P09429 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
HMGB1P09429 LINC01521-201ENST00000504184 1943 ntBASIC24.3■■□□□ 1.48
HMGB1P09429 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC24.3■■□□□ 1.48
HMGB1P09429 AC006015.1-201ENST00000429970 570 ntBASIC24.3■■□□□ 1.48
HMGB1P09429 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.3■■□□□ 1.48
HMGB1P09429 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC24.3■■□□□ 1.48
HMGB1P09429 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
HMGB1P09429 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
HMGB1P09429 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
HMGB1P09429 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC24.3■■□□□ 1.48
HMGB1P09429 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC24.3■■□□□ 1.48
HMGB1P09429 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC24.3■■□□□ 1.48
HMGB1P09429 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC24.29■■□□□ 1.48
HMGB1P09429 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
HMGB1P09429 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
HMGB1P09429 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
HMGB1P09429 AP005212.1-201ENST00000581547 1997 ntBASIC24.29■■□□□ 1.48
HMGB1P09429 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
HMGB1P09429 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
HMGB1P09429 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
HMGB1P09429 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
HMGB1P09429 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
HMGB1P09429 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
HMGB1P09429 AC007322.4-201ENST00000509611 723 ntBASIC24.29■■□□□ 1.48
HMGB1P09429 AL162412.1-201ENST00000567129 965 ntBASIC24.29■■□□□ 1.48
HMGB1P09429 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
HMGB1P09429 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms