Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.58■■□□□ 1.05
APOEP02649 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.58■■□□□ 1.05
APOEP02649 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
APOEP02649 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.58■■□□□ 1.05
APOEP02649 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
APOEP02649 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.58■■□□□ 1.04
APOEP02649 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
APOEP02649 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.58■■□□□ 1.04
APOEP02649 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.58■■□□□ 1.04
APOEP02649 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.58■■□□□ 1.04
APOEP02649 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
APOEP02649 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
APOEP02649 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
APOEP02649 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
APOEP02649 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
APOEP02649 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.57■■□□□ 1.04
APOEP02649 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
APOEP02649 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
APOEP02649 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.57■■□□□ 1.04
APOEP02649 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
APOEP02649 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
APOEP02649 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
APOEP02649 CROCCP5-201ENST00000436658 830 ntBASIC21.57■■□□□ 1.04
APOEP02649 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
APOEP02649 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.57■■□□□ 1.04
APOEP02649 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
APOEP02649 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
APOEP02649 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
APOEP02649 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
APOEP02649 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
APOEP02649 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
APOEP02649 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
APOEP02649 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
APOEP02649 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
APOEP02649 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
APOEP02649 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
APOEP02649 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.56■■□□□ 1.04
APOEP02649 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
APOEP02649 AL591742.1-201ENST00000604433 565 ntBASIC21.56■■□□□ 1.04
APOEP02649 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
APOEP02649 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
APOEP02649 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
APOEP02649 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
APOEP02649 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.56■■□□□ 1.04
APOEP02649 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.56■■□□□ 1.04
APOEP02649 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
APOEP02649 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
APOEP02649 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
APOEP02649 AC068338.2-201ENST00000563278 1430 ntBASIC21.55■■□□□ 1.04
APOEP02649 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
APOEP02649 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.55■■□□□ 1.04
APOEP02649 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.55■■□□□ 1.04
APOEP02649 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
APOEP02649 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
APOEP02649 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
APOEP02649 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.55■■□□□ 1.04
APOEP02649 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
APOEP02649 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.55■■□□□ 1.04
APOEP02649 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.55■■□□□ 1.04
APOEP02649 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.55■■□□□ 1.04
APOEP02649 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.55■■□□□ 1.04
APOEP02649 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
APOEP02649 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
APOEP02649 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
APOEP02649 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
APOEP02649 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
APOEP02649 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.54■■□□□ 1.04
APOEP02649 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
APOEP02649 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
APOEP02649 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
APOEP02649 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
APOEP02649 AC091799.1-201ENST00000422823 811 ntBASIC21.54■■□□□ 1.04
APOEP02649 CYP2T1P-201ENST00000432607 1285 ntBASIC21.54■■□□□ 1.04
APOEP02649 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.54■■□□□ 1.04
APOEP02649 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.54■■□□□ 1.04
APOEP02649 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
APOEP02649 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
APOEP02649 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
APOEP02649 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.54■■□□□ 1.04
APOEP02649 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.54■■□□□ 1.04
APOEP02649 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
APOEP02649 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
APOEP02649 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
APOEP02649 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
APOEP02649 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
APOEP02649 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.53■■□□□ 1.04
APOEP02649 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
APOEP02649 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.53■■□□□ 1.04
APOEP02649 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.53■■□□□ 1.04
APOEP02649 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.53■■□□□ 1.04
APOEP02649 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
APOEP02649 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.53■■□□□ 1.04
APOEP02649 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
APOEP02649 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.53■■□□□ 1.04
APOEP02649 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
APOEP02649 CDV3P1-201ENST00000471403 739 ntBASIC21.53■■□□□ 1.04
APOEP02649 AL162412.1-201ENST00000567129 965 ntBASIC21.53■■□□□ 1.04
APOEP02649 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
APOEP02649 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.53■■□□□ 1.04
APOEP02649 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms