Protein–RNA interactions for Protein: O43300

LRRTM2, Leucine-rich repeat transmembrane neuronal protein 2, humanhuman

Predictions only

Length 516 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRTM2O43300 CNN2P6-201ENST00000439038 900 ntBASIC19.22■□□□□ 0.67
LRRTM2O43300 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.22■□□□□ 0.67
LRRTM2O43300 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.22■□□□□ 0.67
LRRTM2O43300 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LRRTM2O43300 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
LRRTM2O43300 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
LRRTM2O43300 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.22■□□□□ 0.67
LRRTM2O43300 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LRRTM2O43300 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
LRRTM2O43300 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LRRTM2O43300 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.22■□□□□ 0.67
LRRTM2O43300 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LRRTM2O43300 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.21■□□□□ 0.67
LRRTM2O43300 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.21■□□□□ 0.67
LRRTM2O43300 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.21■□□□□ 0.67
LRRTM2O43300 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
LRRTM2O43300 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.21■□□□□ 0.67
LRRTM2O43300 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LRRTM2O43300 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LRRTM2O43300 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.21■□□□□ 0.67
LRRTM2O43300 RNA5SP413-201ENST00000516373 109 ntBASIC19.21■□□□□ 0.67
LRRTM2O43300 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LRRTM2O43300 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.21■□□□□ 0.67
LRRTM2O43300 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LRRTM2O43300 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LRRTM2O43300 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.21■□□□□ 0.67
LRRTM2O43300 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
LRRTM2O43300 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LRRTM2O43300 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
LRRTM2O43300 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
LRRTM2O43300 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
LRRTM2O43300 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LRRTM2O43300 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LRRTM2O43300 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LRRTM2O43300 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LRRTM2O43300 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LRRTM2O43300 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LRRTM2O43300 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.2■□□□□ 0.66
LRRTM2O43300 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.2■□□□□ 0.66
LRRTM2O43300 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.2■□□□□ 0.66
LRRTM2O43300 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
LRRTM2O43300 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
LRRTM2O43300 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
LRRTM2O43300 MIR4758-201ENST00000577688 71 ntBASIC19.2■□□□□ 0.66
LRRTM2O43300 ITM2C-210ENST00000620962 501 ntBASIC19.2■□□□□ 0.66
LRRTM2O43300 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LRRTM2O43300 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LRRTM2O43300 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LRRTM2O43300 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LRRTM2O43300 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.2■□□□□ 0.66
LRRTM2O43300 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LRRTM2O43300 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LRRTM2O43300 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LRRTM2O43300 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.19■□□□□ 0.66
LRRTM2O43300 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LRRTM2O43300 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LRRTM2O43300 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.19■□□□□ 0.66
LRRTM2O43300 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.19■□□□□ 0.66
LRRTM2O43300 AC010536.3-201ENST00000620306 533 ntBASIC19.19■□□□□ 0.66
LRRTM2O43300 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
LRRTM2O43300 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.19■□□□□ 0.66
LRRTM2O43300 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LRRTM2O43300 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LRRTM2O43300 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LRRTM2O43300 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LRRTM2O43300 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LRRTM2O43300 AC092667.1-201ENST00000434301 2586 ntBASIC19.18■□□□□ 0.66
LRRTM2O43300 AC026471.6-201ENST00000622954 1905 ntBASIC19.18■□□□□ 0.66
LRRTM2O43300 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.18■□□□□ 0.66
LRRTM2O43300 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LRRTM2O43300 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
LRRTM2O43300 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.18■□□□□ 0.66
LRRTM2O43300 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.18■□□□□ 0.66
LRRTM2O43300 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.18■□□□□ 0.66
LRRTM2O43300 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LRRTM2O43300 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LRRTM2O43300 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
LRRTM2O43300 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LRRTM2O43300 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LRRTM2O43300 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LRRTM2O43300 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
LRRTM2O43300 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
LRRTM2O43300 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
LRRTM2O43300 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.17■□□□□ 0.66
LRRTM2O43300 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LRRTM2O43300 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.17■□□□□ 0.66
LRRTM2O43300 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.17■□□□□ 0.66
LRRTM2O43300 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LRRTM2O43300 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LRRTM2O43300 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.17■□□□□ 0.66
LRRTM2O43300 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LRRTM2O43300 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
LRRTM2O43300 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
LRRTM2O43300 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.16■□□□□ 0.66
LRRTM2O43300 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRRTM2O43300 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRRTM2O43300 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.16■□□□□ 0.66
LRRTM2O43300 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.16■□□□□ 0.66
LRRTM2O43300 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.16■□□□□ 0.66
LRRTM2O43300 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms