Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TRAV3A0A0B4J244 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 NME4-202ENST00000382940 766 ntTSL 3 BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 AC079140.4-201ENST00000507448 529 ntBASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 NME4-211ENST00000620944 1193 ntTSL 2 BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 AC112907.3-201ENST00000577781 2400 ntBASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC16.59■□□□□ 0.25
TRAV3A0A0B4J244 AL512408.1-201ENST00000569378 2000 ntBASIC16.58■□□□□ 0.25
TRAV3A0A0B4J244 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
TRAV3A0A0B4J244 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TRAV3A0A0B4J244 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TRAV3A0A0B4J244 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC16.58■□□□□ 0.25
TRAV3A0A0B4J244 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV3A0A0B4J244 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 ME2-218ENST00000640965 2476 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 AFG3L1P-217ENST00000557444 2447 ntBASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 KRT87P-202ENST00000534226 1464 ntBASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 SERP1-208ENST00000491660 830 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 AC008175.2-201ENST00000612840 297 ntBASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV3A0A0B4J244 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 IRS3P-201ENST00000223076 1006 ntBASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 AC105265.2-201ENST00000467189 838 ntBASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAV3A0A0B4J244 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms