Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.53■■□□□ 1.04
EBF3Q9H4W6 AC093827.2-201ENST00000512654 315 ntBASIC21.53■■□□□ 1.04
EBF3Q9H4W6 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
EBF3Q9H4W6 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
EBF3Q9H4W6 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
EBF3Q9H4W6 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
EBF3Q9H4W6 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
EBF3Q9H4W6 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.53■■□□□ 1.04
EBF3Q9H4W6 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
EBF3Q9H4W6 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
EBF3Q9H4W6 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
EBF3Q9H4W6 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 ESRRAP1-201ENST00000400596 1257 ntBASIC21.52■■□□□ 1.04
EBF3Q9H4W6 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 LSM12P1-201ENST00000411836 588 ntBASIC21.52■■□□□ 1.04
EBF3Q9H4W6 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.52■■□□□ 1.04
EBF3Q9H4W6 AC091799.1-201ENST00000422823 811 ntBASIC21.52■■□□□ 1.04
EBF3Q9H4W6 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.52■■□□□ 1.04
EBF3Q9H4W6 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
EBF3Q9H4W6 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
EBF3Q9H4W6 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
EBF3Q9H4W6 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
EBF3Q9H4W6 AL355472.2-201ENST00000422958 438 ntBASIC21.51■■□□□ 1.03
EBF3Q9H4W6 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.51■■□□□ 1.03
EBF3Q9H4W6 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.51■■□□□ 1.03
EBF3Q9H4W6 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.51■■□□□ 1.03
EBF3Q9H4W6 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.51■■□□□ 1.03
EBF3Q9H4W6 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
EBF3Q9H4W6 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
EBF3Q9H4W6 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.51■■□□□ 1.03
EBF3Q9H4W6 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
EBF3Q9H4W6 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
EBF3Q9H4W6 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
EBF3Q9H4W6 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 AC245052.3-201ENST00000450182 901 ntBASIC21.5■■□□□ 1.03
EBF3Q9H4W6 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
EBF3Q9H4W6 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
EBF3Q9H4W6 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
EBF3Q9H4W6 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
EBF3Q9H4W6 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.49■■□□□ 1.03
EBF3Q9H4W6 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
EBF3Q9H4W6 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.49■■□□□ 1.03
EBF3Q9H4W6 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
EBF3Q9H4W6 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.49■■□□□ 1.03
EBF3Q9H4W6 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.49■■□□□ 1.03
EBF3Q9H4W6 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.49■■□□□ 1.03
EBF3Q9H4W6 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.49■■□□□ 1.03
EBF3Q9H4W6 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.49■■□□□ 1.03
EBF3Q9H4W6 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
EBF3Q9H4W6 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
EBF3Q9H4W6 KRT17P1-201ENST00000399211 1546 ntBASIC21.49■■□□□ 1.03
EBF3Q9H4W6 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 FAM99A-202ENST00000538190 1989 ntBASIC21.48■■□□□ 1.03
EBF3Q9H4W6 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
EBF3Q9H4W6 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms