Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
COL25A1Q9BXS0 ECEL1P2-202ENST00000465689 757 ntBASIC21.31■■□□□ 1
COL25A1Q9BXS0 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL25A1Q9BXS0 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL25A1Q9BXS0 AC079630.1-202ENST00000618127 1840 ntBASIC21.31■■□□□ 1
COL25A1Q9BXS0 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.31■■□□□ 1
COL25A1Q9BXS0 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
COL25A1Q9BXS0 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL25A1Q9BXS0 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
COL25A1Q9BXS0 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.3■■□□□ 1
COL25A1Q9BXS0 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.3■■□□□ 1
COL25A1Q9BXS0 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
COL25A1Q9BXS0 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL25A1Q9BXS0 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.3■■□□□ 1
COL25A1Q9BXS0 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL25A1Q9BXS0 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.3■■□□□ 1
COL25A1Q9BXS0 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.3■■□□□ 1
COL25A1Q9BXS0 FAM207BP-201ENST00000447172 505 ntBASIC21.3■■□□□ 1
COL25A1Q9BXS0 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.3■■□□□ 1
COL25A1Q9BXS0 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.3■■□□□ 1
COL25A1Q9BXS0 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
COL25A1Q9BXS0 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL25A1Q9BXS0 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL25A1Q9BXS0 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.29■■□□□ 1
COL25A1Q9BXS0 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL25A1Q9BXS0 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.29■■□□□ 1
COL25A1Q9BXS0 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
COL25A1Q9BXS0 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL25A1Q9BXS0 RNF152P1-201ENST00000397754 604 ntBASIC21.29■■□□□ 1
COL25A1Q9BXS0 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC21.29■■□□□ 1
COL25A1Q9BXS0 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
COL25A1Q9BXS0 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.29■■□□□ 1
COL25A1Q9BXS0 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.29■■□□□ 1
COL25A1Q9BXS0 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC21.29■■□□□ 1
COL25A1Q9BXS0 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC21.29■■□□□ 1
COL25A1Q9BXS0 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.29■■□□□ 1
COL25A1Q9BXS0 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
COL25A1Q9BXS0 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL25A1Q9BXS0 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
COL25A1Q9BXS0 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL25A1Q9BXS0 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
COL25A1Q9BXS0 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL25A1Q9BXS0 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
COL25A1Q9BXS0 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
COL25A1Q9BXS0 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL25A1Q9BXS0 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
COL25A1Q9BXS0 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
COL25A1Q9BXS0 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
COL25A1Q9BXS0 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL25A1Q9BXS0 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL25A1Q9BXS0 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.28■■□□□ 1
COL25A1Q9BXS0 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL25A1Q9BXS0 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.28■■□□□ 1
COL25A1Q9BXS0 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
COL25A1Q9BXS0 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL25A1Q9BXS0 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC21.28■■□□□ 1
COL25A1Q9BXS0 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL25A1Q9BXS0 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.28■■□□□ 1
COL25A1Q9BXS0 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC21.28■■□□□ 1
COL25A1Q9BXS0 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC21.28■■□□□ 1
COL25A1Q9BXS0 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.28■■□□□ 1
COL25A1Q9BXS0 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL25A1Q9BXS0 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL25A1Q9BXS0 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL25A1Q9BXS0 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL25A1Q9BXS0 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL25A1Q9BXS0 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL25A1Q9BXS0 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.27■■□□□ 1
COL25A1Q9BXS0 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
COL25A1Q9BXS0 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.27■■□□□ 1
COL25A1Q9BXS0 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.27■■□□□ 1
COL25A1Q9BXS0 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.27■■□□□ 1
COL25A1Q9BXS0 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC21.27■■□□□ 1
COL25A1Q9BXS0 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.27■■□□□ 1
COL25A1Q9BXS0 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL25A1Q9BXS0 AC079089.2-201ENST00000531211 1277 ntBASIC21.27■■□□□ 1
COL25A1Q9BXS0 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.27■■□□□ 1
COL25A1Q9BXS0 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.27■■□□□ 1
COL25A1Q9BXS0 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.27■■□□□ 1
COL25A1Q9BXS0 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL25A1Q9BXS0 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 AL353803.4-201ENST00000565882 1934 ntBASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 KRT17P6-201ENST00000453795 1220 ntBASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 AC005829.2-201ENST00000571422 1056 ntBASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 AC139887.4-201ENST00000607877 719 ntBASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 AC069148.1-201ENST00000608741 768 ntBASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC21.26■□□□□ 0.99
COL25A1Q9BXS0 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms