Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PTP4A1Q93096 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.56■□□□□ 0.56
PTP4A1Q93096 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTP4A1Q93096 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTP4A1Q93096 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTP4A1Q93096 AL162377.1-201ENST00000618844 1793 ntBASIC18.55■□□□□ 0.56
PTP4A1Q93096 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.55■□□□□ 0.56
PTP4A1Q93096 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.55■□□□□ 0.56
PTP4A1Q93096 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTP4A1Q93096 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.55■□□□□ 0.56
PTP4A1Q93096 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.55■□□□□ 0.56
PTP4A1Q93096 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTP4A1Q93096 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
PTP4A1Q93096 IRS3P-201ENST00000223076 1006 ntBASIC18.55■□□□□ 0.56
PTP4A1Q93096 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTP4A1Q93096 AC105265.2-201ENST00000467189 838 ntBASIC18.55■□□□□ 0.56
PTP4A1Q93096 EEF1DP3-203ENST00000566025 782 ntBASIC18.55■□□□□ 0.56
PTP4A1Q93096 AC053503.5-201ENST00000601508 636 ntBASIC18.55■□□□□ 0.56
PTP4A1Q93096 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTP4A1Q93096 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
PTP4A1Q93096 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
PTP4A1Q93096 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.55■□□□□ 0.56
PTP4A1Q93096 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTP4A1Q93096 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
PTP4A1Q93096 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTP4A1Q93096 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTP4A1Q93096 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTP4A1Q93096 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.54■□□□□ 0.56
PTP4A1Q93096 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 AC011484.1-201ENST00000377652 1995 ntBASIC18.54■□□□□ 0.56
PTP4A1Q93096 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTP4A1Q93096 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTP4A1Q93096 STOX2-205ENST00000513034 807 ntTSL 3 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTP4A1Q93096 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTP4A1Q93096 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTP4A1Q93096 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTP4A1Q93096 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTP4A1Q93096 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.54■□□□□ 0.56
PTP4A1Q93096 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.53■□□□□ 0.56
PTP4A1Q93096 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.53■□□□□ 0.56
PTP4A1Q93096 AC007952.6-201ENST00000573168 2673 ntBASIC18.53■□□□□ 0.56
PTP4A1Q93096 AC003957.1-201ENST00000625108 2673 ntBASIC18.53■□□□□ 0.56
PTP4A1Q93096 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTP4A1Q93096 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTP4A1Q93096 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTP4A1Q93096 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
PTP4A1Q93096 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.53■□□□□ 0.56
PTP4A1Q93096 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.53■□□□□ 0.56
PTP4A1Q93096 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.53■□□□□ 0.56
PTP4A1Q93096 AL512408.1-201ENST00000569378 2000 ntBASIC18.53■□□□□ 0.56
PTP4A1Q93096 AC061975.6-201ENST00000579045 1553 ntBASIC18.53■□□□□ 0.56
PTP4A1Q93096 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.53■□□□□ 0.56
PTP4A1Q93096 AFG3L1P-217ENST00000557444 2447 ntBASIC18.53■□□□□ 0.56
PTP4A1Q93096 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTP4A1Q93096 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTP4A1Q93096 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.53■□□□□ 0.56
PTP4A1Q93096 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.52■□□□□ 0.56
PTP4A1Q93096 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTP4A1Q93096 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTP4A1Q93096 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
PTP4A1Q93096 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTP4A1Q93096 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.52■□□□□ 0.56
PTP4A1Q93096 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.52■□□□□ 0.56
PTP4A1Q93096 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PTP4A1Q93096 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.52■□□□□ 0.56
PTP4A1Q93096 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTP4A1Q93096 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PTP4A1Q93096 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PTP4A1Q93096 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTP4A1Q93096 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTP4A1Q93096 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PTP4A1Q93096 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
PTP4A1Q93096 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
PTP4A1Q93096 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PTP4A1Q93096 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
PTP4A1Q93096 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTP4A1Q93096 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTP4A1Q93096 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTP4A1Q93096 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTP4A1Q93096 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTP4A1Q93096 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTP4A1Q93096 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTP4A1Q93096 AP004607.4-201ENST00000530158 1459 ntBASIC18.51■□□□□ 0.55
PTP4A1Q93096 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.51■□□□□ 0.55
PTP4A1Q93096 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms