Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 AC027702.1-201ENST00000563810 1770 ntBASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 AC079140.4-201ENST00000507448 529 ntBASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 AC005837.3-201ENST00000612163 286 ntBASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.81■□□□□ 0.76
CLHC1Q8NHS4 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 AP004607.4-201ENST00000530158 1459 ntBASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 AC007225.1-201ENST00000566331 1836 ntBASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLHC1Q8NHS4 FP700111.2-201ENST00000619190 1892 ntBASIC19.79■□□□□ 0.76
CLHC1Q8NHS4 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLHC1Q8NHS4 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLHC1Q8NHS4 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.79■□□□□ 0.76
CLHC1Q8NHS4 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLHC1Q8NHS4 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.79■□□□□ 0.76
CLHC1Q8NHS4 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLHC1Q8NHS4 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLHC1Q8NHS4 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLHC1Q8NHS4 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.79■□□□□ 0.76
CLHC1Q8NHS4 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLHC1Q8NHS4 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLHC1Q8NHS4 GABARAPL3-202ENST00000624044 1851 ntBASIC19.79■□□□□ 0.76
CLHC1Q8NHS4 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLHC1Q8NHS4 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLHC1Q8NHS4 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 IRS3P-201ENST00000223076 1006 ntBASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 KRT87P-202ENST00000534226 1464 ntBASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLHC1Q8NHS4 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLHC1Q8NHS4 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLHC1Q8NHS4 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
CLHC1Q8NHS4 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLHC1Q8NHS4 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CLHC1Q8NHS4 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLHC1Q8NHS4 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLHC1Q8NHS4 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLHC1Q8NHS4 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLHC1Q8NHS4 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
CLHC1Q8NHS4 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CLHC1Q8NHS4 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.77■□□□□ 0.75
CLHC1Q8NHS4 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
CLHC1Q8NHS4 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLHC1Q8NHS4 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms