Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 USF2-207ENST00000595068 1612 ntTSL 5 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 AC090340.1-201ENST00000620778 4980 ntBASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 C17orf82-201ENST00000623772 1530 ntBASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN3Q8NCR9 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLRN3Q8NCR9 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 PARN-205ENST00000539279 1557 ntTSL 2 BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 CA15P2-201ENST00000611168 834 ntBASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLRN3Q8NCR9 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 MIR639-201ENST00000384974 98 ntBASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms