Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 AC092118.2-201ENST00000613495 667 ntBASIC19.18■□□□□ 0.66
BEST3Q8N1M1 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
BEST3Q8N1M1 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BEST3Q8N1M1 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BEST3Q8N1M1 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.17■□□□□ 0.66
BEST3Q8N1M1 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
BEST3Q8N1M1 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.17■□□□□ 0.66
BEST3Q8N1M1 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
BEST3Q8N1M1 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.17■□□□□ 0.66
BEST3Q8N1M1 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
BEST3Q8N1M1 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.17■□□□□ 0.66
BEST3Q8N1M1 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BEST3Q8N1M1 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.17■□□□□ 0.66
BEST3Q8N1M1 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
BEST3Q8N1M1 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 TSPY20P-201ENST00000450910 630 ntBASIC19.16■□□□□ 0.66
BEST3Q8N1M1 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BEST3Q8N1M1 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BEST3Q8N1M1 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
BEST3Q8N1M1 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BEST3Q8N1M1 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
BEST3Q8N1M1 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BEST3Q8N1M1 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BEST3Q8N1M1 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.14■□□□□ 0.65
BEST3Q8N1M1 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.14■□□□□ 0.65
BEST3Q8N1M1 CDV3P1-201ENST00000471403 739 ntBASIC19.14■□□□□ 0.65
BEST3Q8N1M1 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.14■□□□□ 0.65
BEST3Q8N1M1 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.14■□□□□ 0.65
BEST3Q8N1M1 MIR4651-201ENST00000582622 73 ntBASIC19.14■□□□□ 0.65
BEST3Q8N1M1 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.14■□□□□ 0.65
BEST3Q8N1M1 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
BEST3Q8N1M1 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
BEST3Q8N1M1 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
BEST3Q8N1M1 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
BEST3Q8N1M1 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BEST3Q8N1M1 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.13■□□□□ 0.65
BEST3Q8N1M1 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BEST3Q8N1M1 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
BEST3Q8N1M1 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
BEST3Q8N1M1 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
BEST3Q8N1M1 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.13■□□□□ 0.65
BEST3Q8N1M1 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BEST3Q8N1M1 FAM21FP-204ENST00000608637 956 ntBASIC19.13■□□□□ 0.65
BEST3Q8N1M1 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
BEST3Q8N1M1 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
BEST3Q8N1M1 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
BEST3Q8N1M1 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
BEST3Q8N1M1 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
BEST3Q8N1M1 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
BEST3Q8N1M1 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
BEST3Q8N1M1 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms