Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC60Q8IWA6 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC60Q8IWA6 MCRIP2P1-201ENST00000394346 511 ntBASIC23.08■■□□□ 1.29
CCDC60Q8IWA6 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
CCDC60Q8IWA6 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC23.08■■□□□ 1.29
CCDC60Q8IWA6 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC23.08■■□□□ 1.29
CCDC60Q8IWA6 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC60Q8IWA6 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
CCDC60Q8IWA6 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC60Q8IWA6 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC60Q8IWA6 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC60Q8IWA6 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC23.08■■□□□ 1.29
CCDC60Q8IWA6 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CCDC60Q8IWA6 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
CCDC60Q8IWA6 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 CYP21A1P-202ENST00000354927 1481 ntBASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 LSM12P1-201ENST00000411836 588 ntBASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC60Q8IWA6 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 PARN-205ENST00000539279 1557 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 TSPY20P-201ENST00000450910 630 ntBASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC60Q8IWA6 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 AC097658.1-201ENST00000475555 843 ntBASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 TBCB-214ENST00000629269 413 ntTSL 5 BASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
CCDC60Q8IWA6 AL024507.2-201ENST00000606070 2574 ntBASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 SERPINH1P1-201ENST00000419794 1249 ntBASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 RNA5SP413-201ENST00000516373 109 ntBASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC60Q8IWA6 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC60Q8IWA6 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC60Q8IWA6 GCK-205ENST00000437084 1385 ntTSL 5 BASIC23.03■■□□□ 1.28
CCDC60Q8IWA6 LINC00565-201ENST00000562710 2331 ntBASIC23.03■■□□□ 1.28
CCDC60Q8IWA6 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC60Q8IWA6 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC60Q8IWA6 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
CCDC60Q8IWA6 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC23.03■■□□□ 1.28
CCDC60Q8IWA6 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23.03■■□□□ 1.28
CCDC60Q8IWA6 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC60Q8IWA6 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC23.03■■□□□ 1.28
CCDC60Q8IWA6 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC60Q8IWA6 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC23.03■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms