Protein–RNA interactions for Protein: Q86X40

LRRC28, Leucine-rich repeat-containing protein 28, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28Q86X40 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRRC28Q86X40 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.34■□□□□ 0.53
LRRC28Q86X40 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRRC28Q86X40 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.33■□□□□ 0.53
LRRC28Q86X40 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRRC28Q86X40 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRRC28Q86X40 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.33■□□□□ 0.53
LRRC28Q86X40 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.33■□□□□ 0.52
LRRC28Q86X40 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.33■□□□□ 0.52
LRRC28Q86X40 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRRC28Q86X40 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.33■□□□□ 0.52
LRRC28Q86X40 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.33■□□□□ 0.52
LRRC28Q86X40 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.33■□□□□ 0.52
LRRC28Q86X40 AC087239.1-201ENST00000622671 572 ntBASIC18.33■□□□□ 0.52
LRRC28Q86X40 AL358852.1-201ENST00000623174 1268 ntBASIC18.33■□□□□ 0.52
LRRC28Q86X40 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.33■□□□□ 0.52
LRRC28Q86X40 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRRC28Q86X40 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRRC28Q86X40 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRRC28Q86X40 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRRC28Q86X40 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.33■□□□□ 0.52
LRRC28Q86X40 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LRRC28Q86X40 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRRC28Q86X40 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRRC28Q86X40 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.32■□□□□ 0.52
LRRC28Q86X40 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LRRC28Q86X40 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.32■□□□□ 0.52
LRRC28Q86X40 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.32■□□□□ 0.52
LRRC28Q86X40 PCDHAC2-203ENST00000615316 3011 ntBASIC18.32■□□□□ 0.52
LRRC28Q86X40 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.32■□□□□ 0.52
LRRC28Q86X40 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.32■□□□□ 0.52
LRRC28Q86X40 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.32■□□□□ 0.52
LRRC28Q86X40 AC026271.2-201ENST00000428091 497 ntBASIC18.32■□□□□ 0.52
LRRC28Q86X40 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.32■□□□□ 0.52
LRRC28Q86X40 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.32■□□□□ 0.52
LRRC28Q86X40 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.32■□□□□ 0.52
LRRC28Q86X40 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.32■□□□□ 0.52
LRRC28Q86X40 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.32■□□□□ 0.52
LRRC28Q86X40 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.32■□□□□ 0.52
LRRC28Q86X40 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LRRC28Q86X40 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.31■□□□□ 0.52
LRRC28Q86X40 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.31■□□□□ 0.52
LRRC28Q86X40 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.31■□□□□ 0.52
LRRC28Q86X40 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRRC28Q86X40 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRRC28Q86X40 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LRRC28Q86X40 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRRC28Q86X40 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRRC28Q86X40 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRRC28Q86X40 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.31■□□□□ 0.52
LRRC28Q86X40 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LRRC28Q86X40 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRRC28Q86X40 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.31■□□□□ 0.52
LRRC28Q86X40 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.31■□□□□ 0.52
LRRC28Q86X40 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRRC28Q86X40 AC010141.3-201ENST00000456659 717 ntBASIC18.31■□□□□ 0.52
LRRC28Q86X40 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.31■□□□□ 0.52
LRRC28Q86X40 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.31■□□□□ 0.52
LRRC28Q86X40 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.31■□□□□ 0.52
LRRC28Q86X40 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.31■□□□□ 0.52
LRRC28Q86X40 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRRC28Q86X40 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.31■□□□□ 0.52
LRRC28Q86X40 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRRC28Q86X40 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRRC28Q86X40 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
LRRC28Q86X40 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.3■□□□□ 0.52
LRRC28Q86X40 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.3■□□□□ 0.52
LRRC28Q86X40 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LRRC28Q86X40 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.3■□□□□ 0.52
LRRC28Q86X40 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LRRC28Q86X40 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.3■□□□□ 0.52
LRRC28Q86X40 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
LRRC28Q86X40 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.3■□□□□ 0.52
LRRC28Q86X40 AL354811.1-201ENST00000610286 706 ntBASIC18.3■□□□□ 0.52
LRRC28Q86X40 MIR6821-201ENST00000617625 74 ntBASIC18.3■□□□□ 0.52
LRRC28Q86X40 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LRRC28Q86X40 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.3■□□□□ 0.52
LRRC28Q86X40 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
LRRC28Q86X40 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LRRC28Q86X40 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LRRC28Q86X40 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LRRC28Q86X40 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LRRC28Q86X40 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms