Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL6A3P12111 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL6A3P12111 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL6A3P12111 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL6A3P12111 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL6A3P12111 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL6A3P12111 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL6A3P12111 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC21.92■■□□□ 1.1
COL6A3P12111 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.92■■□□□ 1.1
COL6A3P12111 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.92■■□□□ 1.1
COL6A3P12111 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL6A3P12111 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL6A3P12111 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL6A3P12111 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL6A3P12111 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.92■■□□□ 1.1
COL6A3P12111 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.92■■□□□ 1.1
COL6A3P12111 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL6A3P12111 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL6A3P12111 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.92■■□□□ 1.1
COL6A3P12111 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL6A3P12111 FAM197Y1-201ENST00000421178 764 ntBASIC21.91■■□□□ 1.1
COL6A3P12111 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL6A3P12111 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC21.91■■□□□ 1.1
COL6A3P12111 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
COL6A3P12111 AC243732.1-201ENST00000612648 864 ntBASIC21.91■■□□□ 1.1
COL6A3P12111 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
COL6A3P12111 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.91■■□□□ 1.1
COL6A3P12111 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL6A3P12111 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.91■■□□□ 1.1
COL6A3P12111 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL6A3P12111 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.91■■□□□ 1.1
COL6A3P12111 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC21.91■■□□□ 1.1
COL6A3P12111 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.91■■□□□ 1.1
COL6A3P12111 AC061975.6-201ENST00000579045 1553 ntBASIC21.91■■□□□ 1.1
COL6A3P12111 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
COL6A3P12111 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL6A3P12111 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL6A3P12111 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
COL6A3P12111 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.91■■□□□ 1.1
COL6A3P12111 AC120498.8-201ENST00000614275 531 ntBASIC21.91■■□□□ 1.1
COL6A3P12111 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.91■■□□□ 1.1
COL6A3P12111 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL6A3P12111 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL6A3P12111 KRT8P10-201ENST00000450021 1447 ntBASIC21.9■■□□□ 1.1
COL6A3P12111 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL6A3P12111 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
COL6A3P12111 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL6A3P12111 FDX1P1-201ENST00000449115 551 ntBASIC21.9■■□□□ 1.1
COL6A3P12111 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.9■■□□□ 1.1
COL6A3P12111 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC21.9■■□□□ 1.1
COL6A3P12111 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
COL6A3P12111 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC21.9■■□□□ 1.1
COL6A3P12111 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC21.9■■□□□ 1.1
COL6A3P12111 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.9■■□□□ 1.1
COL6A3P12111 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL6A3P12111 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL6A3P12111 AK4P3-201ENST00000418260 669 ntBASIC21.89■■□□□ 1.1
COL6A3P12111 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL6A3P12111 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.89■■□□□ 1.1
COL6A3P12111 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL6A3P12111 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
COL6A3P12111 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL6A3P12111 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC21.89■■□□□ 1.09
COL6A3P12111 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL6A3P12111 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL6A3P12111 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.89■■□□□ 1.09
COL6A3P12111 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC21.89■■□□□ 1.09
COL6A3P12111 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL6A3P12111 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL6A3P12111 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL6A3P12111 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.88■■□□□ 1.09
COL6A3P12111 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.88■■□□□ 1.09
COL6A3P12111 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.88■■□□□ 1.09
COL6A3P12111 AL691432.3-201ENST00000621860 400 ntBASIC21.88■■□□□ 1.09
COL6A3P12111 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL6A3P12111 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL6A3P12111 FAM8A6P-201ENST00000407496 1135 ntBASIC21.88■■□□□ 1.09
COL6A3P12111 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL6A3P12111 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.87■■□□□ 1.09
COL6A3P12111 AC139530.3-201ENST00000620344 690 ntBASIC21.87■■□□□ 1.09
COL6A3P12111 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
COL6A3P12111 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.87■■□□□ 1.09
COL6A3P12111 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
COL6A3P12111 AC010203.1-204ENST00000548782 407 ntBASIC21.87■■□□□ 1.09
COL6A3P12111 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL6A3P12111 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL6A3P12111 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.87■■□□□ 1.09
COL6A3P12111 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL6A3P12111 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.87■■□□□ 1.09
COL6A3P12111 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21.86■■□□□ 1.09
COL6A3P12111 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.86■■□□□ 1.09
COL6A3P12111 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL6A3P12111 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL6A3P12111 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
COL6A3P12111 AC093458.2-201ENST00000623150 629 ntBASIC21.86■■□□□ 1.09
COL6A3P12111 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL6A3P12111 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL6A3P12111 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
COL6A3P12111 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.86■■□□□ 1.09
COL6A3P12111 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms