Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.74■□□□□ 0.91
VIMP08670 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.74■□□□□ 0.91
VIMP08670 AC116562.4-201ENST00000641316 2276 ntBASIC20.74■□□□□ 0.91
VIMP08670 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VIMP08670 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VIMP08670 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.73■□□□□ 0.91
VIMP08670 AC133637.1-201ENST00000624115 1537 ntBASIC20.73■□□□□ 0.91
VIMP08670 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VIMP08670 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.73■□□□□ 0.91
VIMP08670 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VIMP08670 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.73■□□□□ 0.91
VIMP08670 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.73■□□□□ 0.91
VIMP08670 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VIMP08670 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VIMP08670 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VIMP08670 YBX1P4-201ENST00000392794 808 ntBASIC20.73■□□□□ 0.91
VIMP08670 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
VIMP08670 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VIMP08670 AC068587.7-201ENST00000641602 218 ntBASIC20.73■□□□□ 0.91
VIMP08670 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.73■□□□□ 0.91
VIMP08670 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.73■□□□□ 0.91
VIMP08670 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.73■□□□□ 0.91
VIMP08670 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
VIMP08670 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VIMP08670 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
VIMP08670 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VIMP08670 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VIMP08670 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
VIMP08670 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VIMP08670 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.72■□□□□ 0.91
VIMP08670 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VIMP08670 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VIMP08670 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.72■□□□□ 0.91
VIMP08670 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VIMP08670 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.72■□□□□ 0.91
VIMP08670 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
VIMP08670 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.72■□□□□ 0.91
VIMP08670 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
VIMP08670 BX323043.1-201ENST00000641006 1765 ntBASIC20.72■□□□□ 0.91
VIMP08670 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VIMP08670 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VIMP08670 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VIMP08670 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VIMP08670 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
VIMP08670 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VIMP08670 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
VIMP08670 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VIMP08670 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VIMP08670 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VIMP08670 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
VIMP08670 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.71■□□□□ 0.91
VIMP08670 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
VIMP08670 AC087239.1-201ENST00000622671 572 ntBASIC20.71■□□□□ 0.91
VIMP08670 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VIMP08670 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VIMP08670 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
VIMP08670 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.71■□□□□ 0.91
VIMP08670 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
VIMP08670 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
VIMP08670 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.91
VIMP08670 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VIMP08670 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VIMP08670 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VIMP08670 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VIMP08670 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
VIMP08670 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.7■□□□□ 0.9
VIMP08670 AC103724.3-201ENST00000564481 992 ntBASIC20.7■□□□□ 0.9
VIMP08670 Z92544.1-202ENST00000571933 1220 ntBASIC20.7■□□□□ 0.9
VIMP08670 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
VIMP08670 FP700111.2-201ENST00000619190 1892 ntBASIC20.7■□□□□ 0.9
VIMP08670 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VIMP08670 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
VIMP08670 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
VIMP08670 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.7■□□□□ 0.9
VIMP08670 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VIMP08670 AP004607.7-201ENST00000527152 1677 ntBASIC20.7■□□□□ 0.9
VIMP08670 AC021242.3-201ENST00000607598 1377 ntBASIC20.7■□□□□ 0.9
VIMP08670 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
VIMP08670 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.7■□□□□ 0.9
VIMP08670 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VIMP08670 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.7■□□□□ 0.9
VIMP08670 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VIMP08670 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.69■□□□□ 0.9
VIMP08670 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
VIMP08670 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.69■□□□□ 0.9
VIMP08670 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
VIMP08670 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.69■□□□□ 0.9
VIMP08670 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VIMP08670 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VIMP08670 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VIMP08670 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VIMP08670 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.69■□□□□ 0.9
VIMP08670 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.69■□□□□ 0.9
VIMP08670 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VIMP08670 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VIMP08670 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VIMP08670 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VIMP08670 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
VIMP08670 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
VIMP08670 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms